AMCG00017547 (sh3rf1)


Basic Information

Item Value
gene id AMCG00017547
gene name sh3rf1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 9164861 ~ 9184746 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017547
GGTGTACCACAGTTACCGTGTGCCAAAGCATTGTATAACTACGATGGCAAAGAGCCTGGCGACCTCAAGTTCAGCAAAGGTGACATCATCATCCTGCGACGACAGGTGGACGAGAACTGGTACCACGGGGAGATCAATGGAGTTCATGGCTTCTTTCCCACCAACTTTGTTCAGATAATCAAACCCTTACCTCAGCCTCCACCTCAGTGCAAAGCACTTTATGACTTTGAAGTGAAGGACAAGGAAGCTGACAAAGACTGCTTGCCCTTCTCAAAGGATGATATTTTGACTGTAATTCGACGAGTGGATGAAAACTGGGCCGAAGGAATGCTTGGAGATAAAATAGGAATCTTCCCCATATCTTACGTTGAGTTCAACTCTGCCGCCAAACAGCTGATCGAGCTGGACAAGCCCTCTGACTCCGGGGGGGATTCGGGGGAGGGCACCTCGGCAGGCGCTCAGAGCAATGGCGTCCAGAAGCCCGCCGATGCCAAGAAGAACACCAAGAAGCGGCACTCCTTCACTTCCCTCACCATGTCCAACAAGTCCTCCCAGGCCTGCCAGAACCGCCACTCCATGGAGATCAGCGGCCCAGTGCTCATCAGCTCCAGCAACCCCACGGCCGCCGCGCGCATCGGGGAGCTGACGGGGGGCCTGTCTTGCAGTGCTCCCTCACAGGTCCATATTAGCACAACTGGTTTGATAGTGACTCCCCCTCCAAGTAGCCCCGTCACCACGGCAACAACTTTCACTTTCCCTTCAGAGACCAGCTACCCGATCGTCCCCGTGGATGgcctcccccctcccccgcctcctcctccccaaGCCCCTGCAGTTGGAGCCTCGTCCTCGGCTGCCTCTGCCCTGGTGGCAGGACAGAGACCGTCCCCTGGACCAGCTGAGCAGAGCGCCTATTGCCGCTCCCAACAGCGGCCGACAGTGTATGTGGCTATGTTCCCATATAGCCCCCGGAAAGACGACGAGCTGGAGCTGAGGAAGGGAGAGATGTTCCTGGTCTTGGAGCGCTGCCAGGACGGCTGGTTCAAGGGGACGTCGATGCACACGGGCAAGATCGGCGTTTTCCCTGGGAACTACATGGCTCCCGTGTCGAGGACGGGTTCCAGCAGCACTCAGCCTAAGGTGTCCATCGCTGTGGCGACTCAGGCTGGCCGGGGGGTGACCATCGTCAGCCCTTCCTCCCAGCAGAAGCCCCCGGGGGCAGTTGCCGGGCCTGACAACGGCAAGCCCCTGACCCCCAGCCCCGTGCCCACAGCCGTGGTGTCTGCTGCCCACATCCAGACCAGCAACCAGCAGGCCAAAATGCTCATGCACATGACCGGCCAGATGACTGTCAATCAGGCCCGCAATGCAGTCAGGACAGCTGCAGCCCACAGCCAGGAGCGGCCCACGGCAGCGGTGACCCCCATCCAGTCCCAGAGCCCCATCAACTACATCCCCTCAGTCTCCGTGCTCCCCCACCTCCCTGTGCCACCCCAGCATCTCTCTGCCCAACCGGCCTATGCTGTCTCTTCCTCCACCGCCCGCTCGGCTGTGCCCCTGAGCTGCGCTGCCACCTCCTTGACGCCCCCCAACGTCAGCGCTGCCTCCCTGGAGGGGGAGACGCCCCTGAGGCCCATCGCCATGCTGGCTGTACCCATCGCCCCCATCAGTGCTCTGCCAGCCAACTCCAATCTGGCCAACAGACCAGACAAGGACAACAACAAGaaggagaagaaaggCCTGCTGAAGCTGCTGTCTGGCGCGTCTGCCAAGAGGAAGCCCCGTTCGTCCCCGCCCTCCTCCCCCACGCTGGAGTCTGAGCAGGCCGCCGCGGAGGTGCTGCAGGGGGCAGTGGGGCCAGAGGTGTCCGCCGCTGTGAGCCACGGCCGCGCCGTGTCCTGCCCCGTGGACTCCGAGGGGGCGTCCTCGTCCGCCGAGGCGCTGCACCGCAAGAGCAGCTCCCTGGACTCCAGCGCGCCCATCGCCCCTCCGCCCAGGCAGCCCTGCTCCTCCCTCAGCTCCCTGCAGCAGGACTCCCGGCCCATCGTGTGCGAGAGGTACCGAGTGGTGGTGTCCTACCCGCCTCAGAGCGAGGCTGAGCTGGAGCTGAAGGAAGGAGATATCGTGTTTGTGCACAAGAAGCGTGAGGATGGCTGGTTCAAAGGCACACTGCAGAGAAACGGAAAGACCGGTCTCTTCCCTGGCAGCTTTGTGGATAGTATGTGAAAAAAATGACACTGACAAGTGGAGGGAGATGTCGAAATCTGCACAAAATCATTAgcacaagatttattttattatttttttgcttatcAAAAGAACCATATGAACTGAGAGCAGCGATGCAGAGAAAAGAAACCCTGAGCACAGCCTACCAGAATTGTGAAGAACACATCAGTGTGTTGTTGTcgttttatttctgtaacatttcaAGCGTAATGTGTGCCTTGTACTGTTTCTCACTTTATTGTATATAATCAAACGTGTAAAACGAAAAGCCACAATACAAGAAAATCAAACTGTTTATAGTGATAATATAAATCTAACTtatttgtttggatttttttttttttttagtaaaagGAATGTTAGGACTTAGGTTAATTTAGGTTAATTTATGAAGATGTTTTCAATGGAGAAGCTGGGTTCTCTCCTTCAGTCTGATAGTCTGGTACCTCTGGTTCACACACAGCCTCCACCCTCCAGTCACTGCTGTTGTCCTTACAGGTTTTAGCGTCACTTTTCTTGGATATGTGCTATTGTTGTATGTGTTGTATAGGGAATGAAGGGGAACCAACAGGATGGCAATCAGAGGCTAATAGAATTTTTTTGAATGattctttatataaattatagagtaatagattttttttttttaatttgtattgttttaagatTATGAAAAACCACACTCCTTCGATCTTGCAGTCAAGAGTTTGtcattttgtgtaaaatatttatttataagaatgGACGTATTGGGCACTCCTGAGATACTTAAAACCTCATTGTATTTATCAGTCGACATTTACACCATACAAAATACTGTTCCACggtatttatactttttcattaatatactaacacatttttaatgggGAAAAATACAACTTATGGTATGTTAAGAACAATCATCATACGAGGCCTTcatttcttcatgttttttaaaatgtattcttttaaGCATTTTCCTTCATTTCGTCTAATGTCCTCACCCTTTTCAGCTGCTAAGCACAAGGGGGTACATGCAGATTAAAGGGTCCTAAGTGGAGATGTTCAATGATATTTCACTTTATAGTTGAAATAACCTTTGTTATGATGATTTCCTTATACCGATAAACCGTAAATATATCATCCCCAAGGCGAAAAGCTAtgggaatagaaaaaaaataagttcagTTTTACTCACTGATTATATGGACGACGTCTTCCAAAAATAACACCTTTAAAATTAATAGTCATATCCAGTCAGTGGGTGAGAGGCCACACAGCTTATTGAAAGGCCAGAACGTTCCGTGGGAAGAAGAGAGACAGTGGTTTTAGTTAGAAAagtgtttaaactgtaaatgtttttcctAAAAAGGGtccattttgttgttttgttgtgtacagaaatgtaaatgccaGTGACATCAACTGTAATTTAGACTTGAATTAGACCATGATTGGTTCTCCACTAGAGTAGAGTTCcaattttaagtgttttacaataataaacctTTCTGAGCTTTGAGGCTGAATCTGGGGTACACCTGTTCCCAATTACTGTTCACTACGGACTCTTTCTTTTGATTGGTTGAGCCCAGAGCTAGTGTTCAGTCGTGTCGCTAATATTGGATGCGTCCCCTAGGCAGAGGGGAACTGATTTATTCACAGAGAAAACATTGAGGGATGCAAGATTGGCAGATGAAGCAATCTAGCTCTAGGTGGTTTAGATCCCTCTTTGAAAGAGACAGCACTCATTTAAAAGGTAGTACATCTAATATAGGTAAGACAGAATGTGCTTTTCTGCCCAAGACATTCATATTGCTTGTATGTTTTAGTAGGTTAGACCTCAGAATAAGCTGATTTAGGGTCACACTATTATTCCAATGTGGTGTCTATTTTAGGGAACATGGTGTGGATGgaattgaaatattttgtgttgttgtgctttGGACGGGGAAAACTGTAAAGGTGGTATTAAACACTGTGAAGACATTGTCACTAAAATACTTGTGTCTTACTGAATCTGTATTTCCATTGTTGTCTTGGCATGCATGTTATGGCTCTACATAGTCATTTCGATTGTGCATGTGATGtacattttgttgctgtttACCATGTGTTCTGTTGTTTGATGTCCATGATGCTGCACGGAGACAAAAATACACCCAATGGTGACATGGAATTGTTCTTCACGCTCTTACATTTCCATCAGCATTGTgctgttgtgaaatgttttaaaccAACATCAAAACAGTACCGTTAATACTATTTGACATATATTAGAGATGTCTGTTGGTAATGTTTTAATCAGatatttgtttaagaaaagTAGGAGAGGTGGTTacatttttactgtaaaataacacCTTGTTCAAACTTGAGGCAGCACTAAACTCTTGACTTAACAGATGTCTTCACCTActtgatatgtttttttgttttttttttagattgtgATAGATGGTTTATTATATAACTTGGCAAAGGAGATGCTGGCATCAGCTAGAAGTCTTATAGTTTTTATCCAAAAAAATGTATGCGTTTCAAAGCACAGCacattttgtaatatgaaaaaaagtataaaaagtgcactttttaaattgtcacctttcagcattttttaaatcattggtGCAAACCTCCATTTATGTGATGCTACAGATAATGACAATTTAATCACTTTTGGTAGGAAAAAACACGATGTACTTCTGTAAAGCTAGAAACTCTCTCTTGGCTAGAATGGCATTTTAAGCTGCCTGGTAACTATTTTGAACCCGTTGGTGTTGCCAAATCCTTCATGTTCTTTCTGGAAAAAagatcaaatataaaaatgcttctAAAACA

Function

symbol description
sh3rf1 Predicted to enable MAP-kinase scaffold activity and ubiquitin protein ligase activity. Predicted to be involved in several processes, including positive regulation of JNK cascade; protein autoubiquitination; and regulation of alpha-beta T cell activation. Predicted to be located in lamellipodium. Orthologous to several human genes including SH3RF1 (SH3 domain containing ring finger 1).

NR:

description
novel protein similar to vertebrate SH3 multiple domains 2 (SH3MD2)

GO:

id name namespace
GO:0042995 cell projection cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K12171 SH3RF, POSH; E3 ubiquitin-protein ligase SH3RF

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017547 True 5052 mRNA 0.47 10 9164861 9184746

Neighbor

gene id symbol gene type direction distance location
AMCG00017546 LOC107736140,LOC107682575 coding downstream 8594 9150844 ~ 9156267 (-)
AMCG00017542 LOC107735811 coding downstream 130856 9021133 ~ 9034005 (-)
AMCG00017541 NA coding downstream 151689 8977238 ~ 9013172 (-)
AMCG00017540 slc10a4,LOC102785779 coding downstream 188196 8973615 ~ 8976665 (-)
AMCG00017539 NA coding downstream 192620 8970191 ~ 8972241 (-)
AMCG00017549 NA coding upstream 44254 9229000 ~ 9231753 (-)
AMCG00017548 NA coding upstream 60470 9245216 ~ 9285503 (-)
AMCG00017550 nwd2 coding upstream 157368 9342114 ~ 9372079 (-)
AMCG00017554 NA coding upstream 310982 9495728 ~ 9547314 (-)
AMCG00017555 LOC106608544 coding upstream 1302551 10487297 ~ 10496150 (-)
G91064 NA non-coding downstream 559235 8603621 ~ 8605626 (-)
G91016 NA non-coding downstream 783191 8289765 ~ 8381670 (-)
G91005 NA non-coding downstream 877744 8286889 ~ 8287117 (-)
G90992 NA non-coding downstream 935300 8229315 ~ 8229561 (-)
G90965 NA non-coding downstream 999956 8164654 ~ 8164905 (-)
G91294 NA non-coding upstream 410184 9594930 ~ 9595162 (-)
G91297 NA non-coding upstream 447899 9632645 ~ 9632859 (-)
G91298 NA non-coding upstream 477818 9662564 ~ 9662788 (-)
G91300 NA non-coding upstream 490800 9675546 ~ 9675779 (-)
G91301 NA non-coding upstream 492725 9677471 ~ 9680221 (-)
G91119 NA other downstream 408954 8755288 ~ 8755907 (-)
AMCG00017531 NA other downstream 416118 8732760 ~ 8748743 (-)
AMCG00017520 NA other downstream 649906 8473490 ~ 8514955 (-)
G90939 LOC105903575 other downstream 1168266 7992137 ~ 7996595 (-)
G90937 NA other downstream 1332269 7830885 ~ 7832592 (-)
AMCG00017556 NA other upstream 1176554 10361300 ~ 10497104 (-)
AMCG00017563 NA other upstream 2319278 11504024 ~ 11506820 (-)
AMCG00017569 NA other upstream 2692614 11877360 ~ 11900600 (-)
AMCG00017582 NA other upstream 3123035 12307781 ~ 12322370 (-)
AMCG00017631 NA other upstream 5248412 14433158 ~ 14484818 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_017303 sh3rf1 coding NC_007131.7 CM002904.2 23742574 ~ 23836967 (+)