AMCG00017548


Basic Information

Item Value
gene id AMCG00017548
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 9245216 ~ 9285503 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017548
gggagcgCTGGAGCGGTTTGGTGCTGCAGCAGAGTGTAACCTGGGCACTTCAATGAAAAAGTATGTGGAGGCAGCCTCTGAAGCACCATGGATAAATACACTAAGGTGAACAAAATAGGTGAAGGCTCGTTTGGGAAAGCGATTTTGGTGAAGTCCAAGGAAGATGGAACACAGTACGTCATCAAAGAGATCAGCATCTCAAGGATGTCCAACAAGGAGAGGCAGGAATCGAGGAGAGAAGTGGCTGTCCTTGCAAACATGAAACATCCCAATATTGTCCAGTACAAGGAATCATTTGAAGAAAGTGGCTGTCTGTATATAGTCATGGACTATTGTGAGGGTGGGGATCTCTTCAAGAGGATTAATGCTCAGAAGGGCATTTTGTTTTCCGAAGATCAGATCATGGATTGGTTTGTACAGATCTGCCTCGCCTTGAAACATGTGCATGACAGAAAAATTCTTCACAGGGATATAAAATCACAGAATATCTTTTTGACCAAATGTGGAACGATACAGCTGGGAGATTTTGGAATTGCCAGAGTCCTTAATAGCACTGTTGAGTTGGCAAGGACTTGCATAGGAACACCTTACTATTTATCACCAGAAATTTGTGAAAACAAAccttacaacaacaaaagtGATATTTGGGCTTTGGGTTGTGTCCTGTATGAAATGTGCACCCTTAAGCATGCATTTGAGGCTGGAAACATGAAGAATCTGGTACTCAAGATAATTCGTGGTTCCTACCCACCCGTCTCTCTGCACTACTCCTATGATTTACGTCACCTAATGGCGCAGCTCTTTAAGAGAAATCCCAAAGATCGACCTTCTGTAAACTCCATATTGGAGAAACAATTCATATCCAGACGCATAGAAAAGTTCCTCACACCCCAGatAATTGCTCAGGAATTCAGCCATTCAATTCTTCATAACCAGCCTAAAGTCAGTGCTGCTCAAGGAGCACCAGCAAAGAGGCCTGCCCAGGGCCCGACCTCAGCCTCTGTAGCACCTGCTCAGAAAATCACCAAACCAGCTGCCAAGTATGGAGTGCCTTTAACTGTGAGAAAGTCTGGGGATGGAGCAAAGAAGTCCACTGAGAGGAAGCCCTTAGTGAAACACAAGCAGGCCTACCCAGCTCCAGTGAGGAGAGTGAGTCATGCAGAAGAACAGAGGAAAAAGTATGAGGAGGTTGTCCGGAAGAAGAGGCTGGAGCTAATggaaaaagacagaaagcagAGGGAGCAAATGTATCTCTTGAAGGCCGGACAGATGAAAAGATTTGAAAGGGAAAAGCTGAATCGCATCAACCGAGCTCGAGAGCAGGGCTGGAGGCACGTGCTCAGCTCCAGTGGGGGTGGAGGCAGTCCAGAGCGAAAGGCTGCGTTCTTTGGAGGTGGTGGAGGGATGGCCCCAGCTCTGGCCCCAGCTCTGGCCCCAGCTCTGGCCCCGGCCTCAAGCAGGAGCCAGTATGAGCAGTACCACGCTGCCCTGGACCAAgtgcagaagcagcagcagcagaaggacGCTGTGAAGGCCGGGGGACACGTTCTGCTCAGGGGCGTGCCAGCAGCTGCGGGACCAGTACTGCCCAACGGGGCTGCTGCAGCTCGTCTCCCTGATCCTGATGCTGTAAAGAGAGAACTGAAGAGACTGGAGCTGGTGTCGAGGCAAGCCAATGCAAACAGACAAAGAGGACAAGTGGCCGCAGAGAGGGCCAAGCAGGTGGAGGAATTCTGGCAACGGAAGAGAGAGGCGATGCTGAACAAGGCCCGAGCTGAAGGACAACTGGGTGCCCTGCAAAACCTGGCAGCTATCTATGGAGGCAGGCCAAATTCTGCAGGAGGTGGGAAAACACGAAACAAGGAAGAGGAGGAGTATTTGGCCAGACTGCGACAGATCCGTCTTCAGAATTTCAACGAGCGTCAAGAGATTAAAGCCAGGCTTCGTGGAGAAAAGTGTGACAGCGATGGGTCAGACAGTCAGGAATCGAGCGACGAGGCAGAACTCAGGAGAAAGAAGATCGAAGCTCTCAAGGCCCAAGCAAAGACTCGAGCTGCCGTGTTGAAGGAACAACtggagaagaagagaagagaggcttatgaaagagagaagaaagccTGGGAGGATCATcTTGCAGGGCGGGGTGTGAAGGCGGCTCCGGCTGCCCCTGGAGCAGGGCCCCCAGCAGGGCTTCCAGCACAGGACCCCGCCGCCAGGGCTCAGCCAGTGGGGAAACCAGGCACACCGGCAATATCTATGACTGCTGCTCTGAAGGACGTGGGGGCTGAGGATCTTGCAGCTGCAAAGAAAACCGCAGAGGAATCCAAAAAGCCAGACCCGACAGTTGTTCAAAGTGAGAAACGAGAGATACTGCGTAGGCTAAATCAGAATCTGAAGGCCCAGAATGGTGATGAAGAGCAAGCAAGTCAGCCCCCAGAAAACCCCCAGCTCCCAGAAGATAGTGGCCCTCCAGCCGGGGAAGAGCACTCGGAGGAGAGAGGATCCGCTGCAGGGGACAGGAAGAAGTGGGATGCCGGAGCTCAGCCTGTCATTTCTGTGGCTCAGCAGACACTGGAAGAGACCTGCCTGGGGACCGCAGACCACACTGTGGGAGAAGTCATTAAACTTGATGCCATGGAGGCCCGGAGGCGAGCCTGGGGAAAGAGTCCTGACACACATGTGTTAAAGGTGCTGGGAGAGGCACAACTGCAGACCCAGACTGTGTTCCTGGGGAATACCAACACTAATGAAGTCGATGCACAGGAAAGTCTTAAGCCAACAGCAGACAAGATGTGTGCTGATGGAGATGCTGTGATTAAGAATTATTTTGAAACactagaaaaagaaatgaaagctgTAGAGCTAGAAGAAAATCCTCCAGCAGACCTGACCTTAGTACCTCAGCCTGTCTCATCAGATCAGCCTACGGATGAACCAGAGGACCTGGAAACTGAGATACTGGAAGAAGTTGCCCGCAATCCTGATGCTGTCGATCCTCCGCCTGGTGTTGTTAAAGCTTGGGAGAAGGAGTCACAGGTGCCAAAGCCAGAAGGGGACAGTCTTCCCCAGGCAGAGTCCATCACAGATGGGGAACCTGCTGAGAAGCTGTCTCAAGGGGCAGAGCCTGGAGCCAAAGAGGGGGTTTGGGAGGAGAGCCCAGCTCTGGAGCCCCTTTTCCAAAAGGTGTCCTCCCCGGCACACCGAAGGGCAGTGGCTCTGGCCATCCTGTCAGCGCAGTCTTCACTGGACGAGTCTGTTGCGTCACGGTCACGCTCAGTCTCACCAGCTAAATCCAAAGACAAGGACTCGCTGCTCATCGGACTCTCCACCGGTCTGTTCGACGCCAATAACCCCAAGATGCTGAGGACGTGCTCCCTGCCGGACCTCAGCAAGCTCTTCAGGACGCTGGTGAATGACCCGGGTGCCGCCGACGCACCGGAGGACAGCCTTGACATTGATGATATGGAAGATGAGCCGACGAAGGCTGAAGAACACTCAGACTCTGAAGACACCATGTTTGAGGATGGGGATGAGGACCTCCAGGAGCTCCAGGCCTCCATGGAAAGACTGTTGCGGGAGCAGCCCAGCGAGGAGTACAGCGAGGAGGATGAGGCCGGGTTCAACGCCAGCCCACCCGAAGATGCACTGGACGGTGCTGAGCCGGAGGCCAACGGACTGGAAGAGGAGGACAACCACCCCAGCAGTGGCAGCGATCTCAATGAAGAGTGGCATTCTGACAACAGTGATGAAGAAGCAGCAAGCGATACTGATGACCAGGACAGTATATTCAGCCGCCTGGAGGAGCTGAGGTTCAGTCTGGAGCAGGACATGGGTTTTGAGAACTTCATCGAGGCCTATAATAAAATTAAGGCTATTCATGAAGATGAAGACGAGAACCTCGATATCGGGTCCAATATCGTGCAGAACATTCTGGGAAGTGAACACCAGCACTTGTATCCCAAGATCCTTCACCTCGTAATGGCTGATGGGGCTTATCAGGAGGACAATGATGAATAGTGGCAATTCTTCAAGGCCTCTGCCCGCCCCTGACAATCTCTGAGTACTTGATGTCTTCCCAAAGTGTGCTGTGCGACAGGAAGGAGTAGCACTGGGTGTAGAAACGCTTACtggagaagaaagaagaaaggtgGCACAGGCAGGGGCTGGATGCATGGTGGATTACAGGTTCACTGCAGAGTATTTgtagcattttgtttcttttctgtcctcttatttattttttactcccAGCTCTGCTGAGATGCACTTTTCTAACCTTAGTGGATATGGAAACATATAAAGTTATAGCTAACCAAAGTATCATTTTGGATGTAATATAAACGCTGGTTCAATTATAAATGAATTATTAGTAATTAGAAATCAACCTGTATTTCTTTTGACTCTGGTAAAGAGAGAGCTTGGTGTACAGGATATTCTTGTCAGTCAGTTTAGGTTCCTTAATTCAGAAGCCTTCCCCTGTCGTGTCTGTCTACTGGACATGTCACAGTATCAGGTATTCGTTCTGAGCGCAGAGACCAGTGTTGCTCTATCTCAGAGTCTTCAGGCAACAAGTCTTTGTGTACTTTTCAGACTTTCTGATGAAATTACTTTTGGATATTTCTCAGACTTTTTAAACAGAATCCAGTTCTATCAGGAGTGTTTTGGGTAAAGGGAAACCTATGCTGAAGGAGTCAGATCAAGTGAGGAATGCTGGGGTACCAATTCTAGTTGATGATACACATGTTACTGATAATGTTATATCACATAAATGAAAGCTAtatgaatggaaataaaaacatgttttttttttttgttctttaatataaattatgatATTATGTATCAAACTTTATAATGACACATGAATAAATGCTTACCTTTTGCTaa

Function

GO: NA

KEGG:

id description
K08857 NEK1_4_5; NIMA (never in mitosis gene a)-related kinase 1/4/5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017548 True 4887 mRNA 0.50 35 9245216 9285503

Neighbor

gene id symbol gene type direction distance location
AMCG00017549 NA coding downstream 13463 9229000 ~ 9231753 (-)
AMCG00017547 sh3rf1 coding downstream 60470 9164861 ~ 9184746 (-)
AMCG00017546 LOC107736140,LOC107682575 coding downstream 88949 9150844 ~ 9156267 (-)
AMCG00017542 LOC107735811 coding downstream 211211 9021133 ~ 9034005 (-)
AMCG00017541 NA coding downstream 232044 8977238 ~ 9013172 (-)
AMCG00017550 nwd2 coding upstream 56611 9342114 ~ 9372079 (-)
AMCG00017554 NA coding upstream 210225 9495728 ~ 9547314 (-)
AMCG00017555 LOC106608544 coding upstream 1201794 10487297 ~ 10496150 (-)
AMCG00017559 NA coding upstream 1662243 10947746 ~ 10948005 (-)
AMCG00017558 NA coding upstream 1662607 10948110 ~ 10949709 (-)
G91064 NA non-coding downstream 639590 8603621 ~ 8605626 (-)
G91016 NA non-coding downstream 863546 8289765 ~ 8381670 (-)
G91005 NA non-coding downstream 958099 8286889 ~ 8287117 (-)
G90992 NA non-coding downstream 1015655 8229315 ~ 8229561 (-)
G90965 NA non-coding downstream 1080311 8164654 ~ 8164905 (-)
G91294 NA non-coding upstream 309427 9594930 ~ 9595162 (-)
G91297 NA non-coding upstream 347142 9632645 ~ 9632859 (-)
G91298 NA non-coding upstream 377061 9662564 ~ 9662788 (-)
G91300 NA non-coding upstream 390043 9675546 ~ 9675779 (-)
G91301 NA non-coding upstream 391968 9677471 ~ 9680221 (-)
G91119 NA other downstream 489309 8755288 ~ 8755907 (-)
AMCG00017531 NA other downstream 496473 8732760 ~ 8748743 (-)
AMCG00017520 NA other downstream 730261 8473490 ~ 8514955 (-)
G90939 LOC105903575 other downstream 1248621 7992137 ~ 7996595 (-)
G90937 NA other downstream 1412624 7830885 ~ 7832592 (-)
AMCG00017556 NA other upstream 1075797 10361300 ~ 10497104 (-)
AMCG00017563 NA other upstream 2218521 11504024 ~ 11506820 (-)
AMCG00017569 NA other upstream 2591857 11877360 ~ 11900600 (-)
AMCG00017582 NA other upstream 3022278 12307781 ~ 12322370 (-)
AMCG00017631 NA other upstream 5147655 14433158 ~ 14484818 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location