AMCG00017553


Basic Information

Item Value
gene id AMCG00017553
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 9630401 ~ 9668976 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017553
ATTGACATCACTGAAGTTGTGAGTCTAGCTGTGCATAAGACTGAAAGCATGATTGAAACTGGGGCTGTCTTCACCTTCGAGATGTATCTGCTGTCAGAACGTGTCTTCCTGTTTGGAGCTGAAACACTGGAATCTCACAGAGAATGGACTCAGGCAATAACCAAGTGTTCCATCCCAACCGCGGTTCAAGACGTCACAAGAAAAGATTTTGAATTGATTGGACAGCTGTATTACAAGGAAGGTTATGATCTTTCCCACTGGAGAGTTGGGTGGTTTGCACTTGAGAAATCCTGCCTGCACTTTTATTCTGAAGCAGAAGATGAAGATGACGAAGTTCTGCAGTTGAAAAGGCTTCAGGAGCTCAcTGTAACCACACATACAGAAGGTGATGAAAGGGTGGATGTGCTATTGATGGTTGAAAATGGAAGAACACTGTATGTGCATGGCTTTACCAAACTGGATTTTGTGGTCTGGCATGCTGCAATCAAAAAGGCAGCTGGTACAGATGGCAATGCTTTGCCAGACCAGCAGCTCAGCAAAAATGGCATTCCCATCATTGTGGATAGCTGCATAGCATTTGTCACTCAGCATGgTCTGTGCTATGAAGGTATTTACCAGAAGAAAGGGAACCCGGAACATGTGACTCAGCTTTTGGACAGCTTTTGGAAAGATGccagaaatgtgaaattaagaATTGGTGAACATCAGCTGGAAGATGTGACAGATGTGTTCAAAACCTTCTTATCTAAAACTGAAGATGCCATACTCACTAAAGAATTATATCCATATTGGATATCTGTTTTAGATCATGAGAATGAGAAGCTCAGAGTGGAGAAGTATTCCACCTTCATTCGAACTTTGCCCAGAGTCAACAGAACAACACTGGCTGCTTTAATGCAACACTTATATAGGATCCAGAAATGCTCTGATATAAATCAAATGAACGCACATAATTTAGCTCTAGAGTTTTCATCCTGTCTGTTCCAAACTGAGGGTCAGACCAGTCAAGAAGTCGCTGTCATTGAAGACCTTATCAACAATTATGTAGAATTGTTTGATGTTAATGAAGCCCAAGTGAAGCAAATGGAAATAGAGAACCGTTTTATAACCAAATGGAAAGACACAATGTTTTCCCAGGCCGGGGATCTAATCTTTGAGGTTTACTTGGAGAAGAAAGAGCCTGAAACCTGCTGCTTAATCAAGGTTTCTCCATCAATGACGGCAGATGAGCTGGCtgataatgtattaaacatgaaGAATATTGTCCCAGACAAGAATGACATTTGGATCACATTTgaagttattgaaaatggagaACTTGAGCGGCCATTACACTACAAAGAAAAGGTCCTCGAGCAAGTTCTGGAGTGGAGCTCTTTAGAGGAACCTGGTTCTGCCTACTTGAGCACTAAACCCGATAAGGAAATCTCATTGAAGTTCATTAAGTGTTACCTAGGCCTGAAGAAAAAGTTGAAGCCACCGACAAGGTATCTATGCTGTGACGAGCAGGAGGCACAGATCGAATGGGTGACTGACATTCTCAGAGTCAAGGCAGCATACATTCCATCATCGTTGCCTTTGCTCACATGGGCAACTAATGCTAATTAA

Function

GO:

id name namespace
GO:0043547 positive regulation of GTPase activity biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017553 True 1608 mRNA 0.42 15 9630401 9668976

Neighbor

gene id symbol gene type direction distance location
AMCG00017551 NA coding upstream 258206 9257206 ~ 9372195 (+)
AMCG00017545 NA coding upstream 483062 9127763 ~ 9147339 (+)
AMCG00017544 NA coding upstream 527198 9086577 ~ 9103203 (+)
AMCG00017543 NA coding upstream 609359 9017879 ~ 9021042 (+)
AMCG00017538 fryl coding upstream 660923 8869114 ~ 8969478 (+)
AMCG00017552 NA coding downstream 224252 9893228 ~ 9895433 (+)
AMCG00017560 NA coding downstream 1721213 11390189 ~ 11402671 (+)
AMCG00017561 NA coding downstream 1838900 11507876 ~ 11525014 (+)
AMCG00017562 fbxl5,LOC106674637 coding downstream 2198189 11867165 ~ 11879473 (+)
AMCG00017577 NA coding downstream 2355280 12024256 ~ 12024505 (+)
G91151 NA non-coding upstream 789363 8838647 ~ 8841038 (+)
G91135 NA non-coding upstream 805564 8819713 ~ 8824837 (+)
G91128 NA non-coding upstream 846312 8783867 ~ 8784089 (+)
G91104 NA non-coding upstream 897769 8732368 ~ 8732632 (+)
G91004 NA non-coding upstream 1343673 8286292 ~ 8286728 (+)
G91307 NA non-coding downstream 497554 10166530 ~ 10166747 (+)
G91310 NA non-coding downstream 628426 10297402 ~ 10297808 (+)
G91329 NA non-coding downstream 899202 10568178 ~ 10568428 (+)
G91334 NA non-coding downstream 1071127 10740103 ~ 10764336 (+)
G91339 NA non-coding downstream 1120622 10789598 ~ 10789889 (+)
G91281 LOC103376870 other upstream 47121 9519773 ~ 9583280 (+)
AMCG00017527 tkfc,LOC107731922,LOC107095500 other upstream 865498 8751713 ~ 8764903 (+)
AMCG00017526 paics,LOC107555752 other upstream 929647 8687697 ~ 8700754 (+)
G90955 NA other upstream 1497547 8132368 ~ 8132854 (+)
AMCG00017508 NA other upstream 1816762 7806378 ~ 7813639 (+)
G91452 cc2d2a other downstream 2210638 11879614 ~ 11880499 (+)
AMCG00017600 NA other downstream 3527919 13196895 ~ 13259760 (+)
AMCG00017615 sorcs2,LOC106577493,LOC107590992,LOC107656200,LOC107722411 other downstream 4112290 13781266 ~ 13830819 (+)
AMCG00017620 htra3,LOC106577909 other downstream 4356660 14025636 ~ 14039063 (+)
G92046 NA other downstream 5408349 15077325 ~ 15084278 (+)

Expression


Co-expression Network