AMCG00017554


Basic Information

Item Value
gene id AMCG00017554
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 9495728 ~ 9547314 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017554
ATGAAGTTAATGTGCATGGCTCAGAAGCAGATCGACAAGACCAAGAACAGCattcacacaaatatatttcctCTGAGAAGGAACAACTACAGCAATTGGAGAGAGCTTGTGCTAAAGGAGCAACTGAGAGTGATAATGGTCACACTGGAGCTGAAAGGAGACATGGCAAAGACACAGGAGGAATGTCACCTAAAGATTGGCCTGCTAGCTGGCTGGCATCCAGTTCAACTGCTCCACAAAGCGGTGGCTCTGGAAATGCAGCCCCCCTGGTTGCTGTGGAGCTCCTCCAGGAAGCTGAAGCAGGAAAACATGCCCTCCTGGAGCACATTGAAAACCATGGTTCACTTCATGAAATTGCTTCCTGTAGAATCAGAAGACCCAAATGATCTTCAGCATTCTTGCTATATTACTGCACCCTGCAATATGATCCAACAAATGACCTGCAGGATTGTGAATGACATGAGTCCACTAATTATAACAGACTCAGAAGAACTGGTTAGCAATATAATCAGAATACAGTGTACAGACACCAGGATAAAAATACCATTCCCAATCACGATTGCGATACCATTCAGTGCCCGCTATCGAGGAAATTACCGTGATATCATGGTGAAGGTGATTGATGATGAGTTACAGCCAAGCTACATACATCCTTTTTCCACTGAAGGCACCTATGGAGGACAGAAGGGTTCATTTGCAGAAGTAAAGGTGTACAAGCTTGGCATATTTTCAGTTGTGTCATGCTTACATAAGGAAAATTTCACTGTTCCCAGAAAAGGACTTTCTCTGAAACTGAGCATGGATGCCAGAATTTCCCTTGATTACCCGCCAGGGTCTTTTAGTGCTCCTGTGATTGTTCAGTCTATGGTCCAGCCTATTGATGCATCACTCATAGCAACACTGAAATCTAAGAATGATTCATACCACTTTGTTGTTTCTACAAGCCCTCTAGTTCATATTGTTCATCCCTCAACACAGTCCTTCCGGAAACCCGTCACTGTCACTCTTCCTTGCCCCCCAAACCCAAACAAGAAGAAGCAAGGAGAGGAAGTAGAACACACAAGACCAACCAGTGCATCAGTAATCAGAAACACTTCCATTCATCGTACAACTATATATGACTTGTGTGTCCTCCTGAACAATTTCAGGGCAATGAGCGCCTCTGTGAAGAATTCAAGAAAGACAGCTAATGAATACCTCTCCTTACTTGGTTATAAATCCAAAGAAGACCAATGGCTTGTCATGGAAGATGTGGCAGTAAGGAATATGCAGAATGGACTAGTCTCTTTCGAAATgactgaacattttgaaaaatttgttgttttacGACTCGTGTCCTCAATGAAACATTCACATTTGACAGCTTTAATTCATGACATCGAAGAGTCTATCTGCAGTACTATGGTTACCATTGTCTTGTATCGAAAAAAAGAACACCCAAACAATGCTGTGGTTATAACAGTTCCCACCAAAGACCTGAGCTGGGAGCTGATGAAGCTTCGTGGAGAAGGATACTGTAGTCCTCCAGACCCATCGGAGGAAATCAAAATGCGAGAAGGAGaacaatttgttttaacatttagtGGAAATATCACATCAGCAGGGGGAAAAAGCAATGGTCCCACACTGCAGAGAATAACATTCCATTCCCAGCGAAAGAACAGGCTGGATCTGTGTTTAAAGGAGGTGGATGAGTTTGGCAATTACTGCTCACCGCATTACAAAGGGAcagcaatattttataaagtCACAAAGGAACAGATTGCTGTGTGTGGGGATATTGAATGTAATCTTCAAGACCCCGTGTGCAAACTCCCATTAACCTTGCCCAAGGTGAGCCAGACAGATGAtttgaatgcttttaaatatttgcctTCTGCCTGTTTTTGCAAGCCCCTCTCAGATGCCCTCCTACTCTGGCTGTCAGAGGAGCTGTCAGAAGAGGACGCAGCTCTCCTGGTGCTCTGCCTCCGAATCCGCCGCAGCTCCATCCAGCTGGTCAAACTCAAAATCCCAGAGAACCTGCCCCAACAGATATTTGAGCTTCTTGTCATGTGGAGGAAGAGTCTTCCCGCCAGTGCTGACAAAATCAGTCTACTCTCACACTATCTCTCTAAGTGTGGTAGAAGCGATCTGGCAAAAGATTTGATTCTACAAGAAAGAATCCACAAATCCGCTGCTCCGCTACTGAAGGTGTTGCCTAAAGTGAGGCTCAAGTCATAG

Function

GO:

id name namespace
GO:0006816 calcium ion transport biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017554 True 2223 mRNA 0.44 12 9495728 9547314

Neighbor

gene id symbol gene type direction distance location
AMCG00017550 nwd2 coding downstream 123649 9342114 ~ 9372079 (-)
AMCG00017548 NA coding downstream 210225 9245216 ~ 9285503 (-)
AMCG00017549 NA coding downstream 263975 9229000 ~ 9231753 (-)
AMCG00017547 sh3rf1 coding downstream 310982 9164861 ~ 9184746 (-)
AMCG00017546 LOC107736140,LOC107682575 coding downstream 339461 9150844 ~ 9156267 (-)
AMCG00017555 LOC106608544 coding upstream 939983 10487297 ~ 10496150 (-)
AMCG00017559 NA coding upstream 1400432 10947746 ~ 10948005 (-)
AMCG00017558 NA coding upstream 1400796 10948110 ~ 10949709 (-)
AMCG00017557 stim2 coding upstream 1746294 11293608 ~ 11315800 (-)
AMCG00017572 LOC108228807 coding upstream 1809491 11356805 ~ 11387412 (-)
G91064 NA non-coding downstream 890102 8603621 ~ 8605626 (-)
G91016 NA non-coding downstream 1114058 8289765 ~ 8381670 (-)
G91005 NA non-coding downstream 1208611 8286889 ~ 8287117 (-)
G90992 NA non-coding downstream 1266167 8229315 ~ 8229561 (-)
G90965 NA non-coding downstream 1330823 8164654 ~ 8164905 (-)
G91294 NA non-coding upstream 47616 9594930 ~ 9595162 (-)
G91297 NA non-coding upstream 85331 9632645 ~ 9632859 (-)
G91298 NA non-coding upstream 115250 9662564 ~ 9662788 (-)
G91300 NA non-coding upstream 128232 9675546 ~ 9675779 (-)
G91301 NA non-coding upstream 130157 9677471 ~ 9680221 (-)
G91119 NA other downstream 739821 8755288 ~ 8755907 (-)
AMCG00017531 NA other downstream 746985 8732760 ~ 8748743 (-)
AMCG00017520 NA other downstream 980773 8473490 ~ 8514955 (-)
G90939 LOC105903575 other downstream 1499133 7992137 ~ 7996595 (-)
G90937 NA other downstream 1663136 7830885 ~ 7832592 (-)
AMCG00017556 NA other upstream 813986 10361300 ~ 10497104 (-)
AMCG00017563 NA other upstream 1956710 11504024 ~ 11506820 (-)
AMCG00017569 NA other upstream 2330046 11877360 ~ 11900600 (-)
AMCG00017582 NA other upstream 2760467 12307781 ~ 12322370 (-)
AMCG00017631 NA other upstream 4885844 14433158 ~ 14484818 (-)

Expression


Co-expression Network