AMCG00017555 (LOC106608544)


Basic Information

Item Value
gene id AMCG00017555
gene name LOC106608544
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 10487297 ~ 10496150 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017555
ATGAGGACTATTGGTGCAGTGGACTATTTATGCTACTGTCTGATCATCCTGCAGCTCCTGCTGACTCAGCCGGCTGCCAAGCAAGTGCTGCGGTACCGCCTGGCAGAGGAAGGACCGGCCGATGTCCGGATAGGCAATGTAGCCGCAGACCTGGGGATTGTAGCCGGTTCGGGGGAGGTCACATTCACGCTGGAATCGGgatctgattattttaaaattgataatATCACCGGGGAGCTGAGCACAAACGAGCGGAGGATCGACCGGGAGAAATTACCCCAGTGCCAGATGATCTTTGACGAAAACGAGTGCTTCATAGATTTCGAAGTGTCTGTGATCGGACCGTCTCAGAGCTGGGTCGACCTGTTTGAAGGCAAAGTGATCATTTTAGATATAAACGATAACACCCCTTCCTTCCCCTCCCCTGTCCTGACTTTGTCGGTAGAAGAGAACAGACCCATAGGCACCCTGTACTTGCTGCCCACTGCTACAGATAGAGATTTTGGGAGGAATGGGATAGAAAGGTATGAGCTCATACAGGACAGTGGGGAAAGCTCGGTGAGGCGGTCGGGGTCAAGTTCAGGGGGACGCACAGACAGTGGGGACAGTTATTCAGGTAAAAGGAGGTTTGATACAGAAGCAGCAGGCAGAAGCAGTGTCTTTGAACTCCAAGTTGCTGACACTACTGATGGAGAGAAGCAACCTCAGCTGATTATTAAGGGAGCACTAGACAGAGAACAGAGGGACTCTTATGAACTCACACTTCGTGTCAGAGATGGAGGCGATCCTCCCAGGTCGTCCCAGTCCATCCTCAGGGTGCTGATCTCTGATGTCAATGACAACAGTCCCCGGTTTGAGAAGAGCGTGTATGAAGCTGACTTAGCGGAAAATAGTTCCCCCGGGACCCCCATACTGCAGCTCAAAGCCACTGATTTAGATGTGGGGGTAAATGGGCAGATAGAGTATGTATTTGGGGCAGCAACTGAGTCAGTGCGCAGGTTGCTTAGACTGGATGAAAATACAGGCTGGTTAAGTGTTTTGCACCGTATAGATAGGGAGGAAGTAAGCCAGCTCCGCTTTACTGTTATGGCAAGAGACAGGGGTCAGCCCCCCAAAATGGACAAAGCTACAGTGGTGTTAAACATCAAGGATGAAAATGATAATGTCCCTATAATAGACATCAGGAAAATTGGCaggatatttttaaaagatggcATTGCAAATGTGGCAGAGGATGTCGTAGTGGATACTCCTATAGCACTAGTGCAAGTGTCTGACCGGGATCAGGGGGAAAATGGGGTGGTTACGTGCACTGTGGTCGGGGATGTGCCATTTCAGCTGAAACCAGCCAGTGAGATTGAAGGAGAgcagaataaaaagaaatactTCCTCCACACATCAGCTCCACTGGACTATGAGGCAACACAGGAGTATAATGTTGTAATTGTAGCAGTGGACTCGGGAAGCCCTAGTTTATCCAGCAATAACTCGTTAATTGTTAAGGTTGGAGATACCAATGATAACCCGCCCATATTTACTCAAAATGTGGTAGAAGTGGCTTTCGCTGAAAACAATGCCCCAGGGGAGAGAGTGGCTACGGTGGTGGCTATAGACGCAGACAGTGGCAAAAACGCCGAAATTGCCTACTCTCTCGACCCGTCTGTATCTGGAATCTTTTCTATAGACCCAGATAACGGTGACATCAGAGTAAACACTGTCTTGGACCGAGAACAGACTGAGAGGTATGAATTTAAAGTAATTGCAAAAGATAAGGGCATCCCTACTCTCCAGGGATCTGCTACGGTGGTGGTCCAAGTAGCAGACAAAAACGACAACGAGCCCAAATTCATGCAGGATGTGTTTACCTTTTATGTCAAGGAGAATCTACAACCGAACAGTCCTGTTGGAATGGTTACAGTAATGGATGCTGACAAAGATCATAACGCAGAAATGAGCCTCTTTATTGAAGAGGAGGATGATATTTTTTCCATTGAGAATGATACAGGAACAATTTATTCCACCATGTCCTTTGACAGGGAGCAAAAAACCACCTACACATTTCGAGTCAAAGCAGTGGACGGTGGGGATCCCCCAAGATCTGCTACTGCTACTGTATCCTTATTTGTAATGGATGAAAACGACAATCCACCGTCCGTCACCTTCCCAAGTAACAACTCATACACCCTCCTGCCACCGTCAAGCAATGTAAGAACTGTGGTGAGAACAGTTTTGGCTACGGACAGTGACACAGGAGTCAATGCAGATCTAAACTATAGTATCGTTGGGGGTAATCCATTTAAACTGTTTGAGATTGATACAGCAAATGGTGTCATATCATTGGTGGGaaaactggaacaaaaacacTATGGTTTGCATCGCCTGGTAGTGCAAGTGAACGACAGTGGCCTCCCTTCCCAGTGCACAACATCCCTTGTCCATGTGTATGTGAATGAGACAATGTCTAATTCCTCAATTGTGGAGGCTCAGATCGCGAAAAGCCTAGGCACTCCTTTATCAATAGACATTGCAGGTGATCCTAACTACGACCTGGGGAAACAAAGACTGAGTATTGTCATCGGAGTTGTAGCAGGCATTATGactgtgattttaataataCTCATCGTTGTCATGGCAAAATACTGCAGACCAAAGAATAAAAATGGGTATGAAGCTGGAAAGAAAGACCACGAAGATTTCTTTACTCCCCAGCAACacgataaaaataaaaaacccaaaaaagacaagaagaacaaaaaatccAAGCAGCCTCTCTACAGCAGCATTGTGACTGTCGAGGCTTCCAAACCCAATGGGCAGCGGTACGATAGTGTGAACGAGAAACTGTCGGACAGCCCGGGTATGGGGCGATACCGCTCGGTGAACGGAGGCCCGGCGAGCCCCGACCTGGCGAGACATTACAAATCAAGTTCACCACTGCCAACAGTTCAGCTTCACCCACAGTCCCCAACTGCTGGGAAAAAACACCAGGCTGTGCAGGAGCTCCCCCCTGCCAACACTTTTGTAGGAACAGGAGATAACATTTCCATTGGATCTGACCACTGTTCTGAGTACAGCTGTCAAACCAACAACAAGTACAACAAACAGGCTGAGGAGCTGGAAAATGCTGCATCTGGCCAAGAAAACGGCTAG

Function

NR:

description
PREDICTED: protocadherin-7-like isoform X3

GO: NA

KEGG:

id description
K16498 PCDHD1; protocadherin delta 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017555 True 3150 mRNA 0.47 2 10487297 10496150

Neighbor

gene id symbol gene type direction distance location
AMCG00017554 NA coding downstream 939983 9495728 ~ 9547314 (-)
AMCG00017550 nwd2 coding downstream 1115218 9342114 ~ 9372079 (-)
AMCG00017548 NA coding downstream 1201794 9245216 ~ 9285503 (-)
AMCG00017549 NA coding downstream 1255544 9229000 ~ 9231753 (-)
AMCG00017547 sh3rf1 coding downstream 1302551 9164861 ~ 9184746 (-)
AMCG00017559 NA coding upstream 451596 10947746 ~ 10948005 (-)
AMCG00017558 NA coding upstream 451960 10948110 ~ 10949709 (-)
AMCG00017557 stim2 coding upstream 797458 11293608 ~ 11315800 (-)
AMCG00017572 LOC108228807 coding upstream 860655 11356805 ~ 11387412 (-)
AMCG00017566 rbpj,LOC106577485 coding upstream 918178 11414328 ~ 11423945 (-)
G91321 NA non-coding downstream 126149 10357400 ~ 10361148 (-)
G91311 NA non-coding downstream 189489 10297405 ~ 10297808 (-)
G91301 NA non-coding downstream 807076 9677471 ~ 9680221 (-)
G91300 NA non-coding downstream 811518 9675546 ~ 9675779 (-)
G91298 NA non-coding downstream 824509 9662564 ~ 9662788 (-)
G91354 NA non-coding upstream 571563 11067713 ~ 11068015 (-)
G91355 NA non-coding upstream 655228 11151378 ~ 11151698 (-)
G91359 NA non-coding upstream 771956 11268106 ~ 11268595 (-)
G91362 NA non-coding upstream 791705 11287855 ~ 11288163 (-)
G91371 NA non-coding upstream 794178 11290328 ~ 11291234 (-)
G91119 NA other downstream 1731390 8755288 ~ 8755907 (-)
AMCG00017531 NA other downstream 1738554 8732760 ~ 8748743 (-)
AMCG00017520 NA other downstream 1972342 8473490 ~ 8514955 (-)
G90939 LOC105903575 other downstream 2490702 7992137 ~ 7996595 (-)
G90937 NA other downstream 2654705 7830885 ~ 7832592 (-)
AMCG00017563 NA other upstream 1007874 11504024 ~ 11506820 (-)
AMCG00017569 NA other upstream 1381210 11877360 ~ 11900600 (-)
AMCG00017582 NA other upstream 1811631 12307781 ~ 12322370 (-)
AMCG00017631 NA other upstream 3937008 14433158 ~ 14484818 (-)
AMCG00017638 scoc,LOC103463814,LOC103132857 other upstream 4263918 14760068 ~ 14764832 (-)

Expression


Co-expression Network