AMCG00017557 (stim2)


Basic Information

Item Value
gene id AMCG00017557
gene name stim2
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 11293608 ~ 11315800 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017557
CCCTGCTTTACTGTGACGCCACCATGTCTCAATGAAGCGGACCGATTCAGTCTGGATGCCCTGCGCCAAATTCATAAAGAGCTTGATGATGACAATGACGGGGGAATTGAAGTAAATGAAAGTGTCGAGttcaTAATTGAAGACATGAAGCAgcaacaaactaacaaacacagTAATCTGCACAGAGAAGACCAGCACATCACGATTGAGGAATTGTGGAAATGTTGGAAAACTTCAGAAGTGCACAACTGGACAGTGGATGAAACTGTGCAGTGGTTGATTGAAATTGTTGAACTGCCTCAGTATGAGAATAATTTTAGGGACTATAACGTAAACGGTAACACCCTACCTCGAATAGCTGCTAATGAACCTTCGTTCATGACATCGCAATTAAAAATCTTGGATCAGAGGCACAAGCAGAAGCTTAACCTAAAGTCTCTAGATGTGGTTCTGTTTGGACCCCCATTACGTCCGCCACACAACTGGAtgaaagattttgttttgctgatttCAATAATCATTGGCGTTGGTGGTTGCTGGTTTGCATACGTTCAGAATAAAACCTCTAAGGAGCACATTTCAAAGATGATGAAAGATTTAGAAAGCCTTCAAAGTGCAGAGCAGAGTCTTCAGGAACTTCAAGAACGGCTTGAGAAAGCCCAGGAGGAAAACCGAACAGTTGCTGTGGAGAAACAGAATTTAGAGCGGAAAATGAGGGATGAAATTATAGATGCCAAAAAGGAGGCCCAACGCCTGCGAGAGCTGAGGGAGGGGGCGGAGTGTGAGCTGAGCCGACTCAAATACGCGGAAGAGGAACTGGTTCAGGTACGCATGGCACTAaggaaagcagagagagaatTTGAAATCCAAGGAGACTGGACAGTCGCAGAGACTCTGCAAAAGTGGCTGCAGTTAACACACGAGGTGGAAGTGCAGTATTACAACATCAAGAAACAGAGTGCCGAGATGCAGTTAACTGTTGCCAAGGAGGAGgcagaaaaaataaaaaagaagagaagTTCAGTCTTTGGGACACTGCATGTAGCCCACAGTTCCTCCCTGGATGAGGTGGACCACAAGATACTAGAGGCAAAAAAAGCTCTGTCTGAGGTAACAGCCTGTCTGCGGGAGCGTCTCCACCGATGGCAGCAGATTGAGAAGCTCTGCGGCTTTCCGGTGGTGCACAATTCAGGGCTGCCCAACCTGACAGCTACCCTCTACTCCGATCACAGCTGGGTGGTCATGCCCAGGGTCTCGGTGCCTCCCTACCCCATTGCTGGTGGAGTGGATGACCTAGACGAAGACACCCCTCCAATCATTCCACAGTTTCCCACGCCACTAATGAAGGCTGGTTCTTTAGCCAGAAGCAGTAGCCTGTGTCGCTCTCGGCGTAGCATGATGAGCTCAGCTCCCCAGCCCATAATGCTCTCCCCAGACCCAGACCTGCTGTCGATGGCCAGCAGTCCTCTCACGTATCACgctgaagaggaggaggacccCATCTACTTCAgcacagaaagaaaactGGAATCTCAGGACACATGCTCTGACTGCGATTCTTTAAATTCCTCCATGGGAAGAAAGCAGTTTGGCAGCACGGAAGTTCAGGAAACTCCCTCTAGGAAAATCTCCAGGGACGAGTTATTCGATAAGGAACTGTGTGCAGCAGATTCACCAACCTCCTTTGATCAGCACAAAGGTTCTCCTGACTCGATGGGTGTTACAGAATCCCAAAGCATGGTCTTTAACCCTGTCAGCAAGATGGTTTACAATGGCATCTTAGAGAAGTCTTACAGTATGGGCCAGCTGCCCAGCCAGCTGCCTGTCTCAGAAAACCGTTATCCTTCTCTTACTTCATTAGATATTGAGGGCAGAGTGGCAAAGGAACAGAAGATGCACAGCATGGCCCAAGACTCCTGTGAGAACGGTGACAAGGTGAAGAAGTCATCCAAgttaaaaagtttatttaagaagaaaaag

Function

symbol description
stim2 Enables calcium channel regulator activity; calcium ion binding activity; and store-operated calcium channel activity. Involved in activation of store-operated calcium channel activity and cellular calcium ion homeostasis. Located in endoplasmic reticulum and plasma membrane.

NR:

description
PREDICTED: stromal interaction molecule 2

GO: NA

KEGG:

id description
K18196 STIM2; stromal interaction molecule 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017557 True 1980 mRNA 0.48 11 11293608 11315800

Neighbor

gene id symbol gene type direction distance location
AMCG00017558 NA coding downstream 343899 10948110 ~ 10949709 (-)
AMCG00017559 NA coding downstream 345603 10947746 ~ 10948005 (-)
AMCG00017555 LOC106608544 coding downstream 797458 10487297 ~ 10496150 (-)
AMCG00017554 NA coding downstream 1746294 9495728 ~ 9547314 (-)
AMCG00017550 nwd2 coding downstream 1921529 9342114 ~ 9372079 (-)
AMCG00017572 LOC108228807 coding upstream 41005 11356805 ~ 11387412 (-)
AMCG00017566 rbpj,LOC106577485 coding upstream 98528 11414328 ~ 11423945 (-)
AMCG00017571 NA coding upstream 215310 11531110 ~ 11536385 (-)
AMCG00017570 prdm5,LOC106560247 coding upstream 426684 11742484 ~ 11770097 (-)
AMCG00017564 ndnf coding upstream 469840 11785640 ~ 11796072 (-)
G91371 NA non-coding downstream 2374 11290328 ~ 11291234 (-)
G91362 NA non-coding downstream 5445 11287855 ~ 11288163 (-)
G91359 NA non-coding downstream 25013 11268106 ~ 11268595 (-)
G91355 NA non-coding downstream 141910 11151378 ~ 11151698 (-)
G91354 NA non-coding downstream 225593 11067713 ~ 11068015 (-)
G91381 NA non-coding upstream 81720 11397520 ~ 11397731 (-)
G91466 NA non-coding upstream 512208 11828008 ~ 11829693 (-)
G91467 NA non-coding upstream 515633 11831433 ~ 11833898 (-)
G91539 NA non-coding upstream 1025642 12341442 ~ 12341735 (-)
G91553 NA non-coding upstream 1180491 12496291 ~ 12499947 (-)
AMCG00017556 NA other downstream 796504 10361300 ~ 10497104 (-)
G91119 NA other downstream 2537701 8755288 ~ 8755907 (-)
AMCG00017531 NA other downstream 2544865 8732760 ~ 8748743 (-)
AMCG00017520 NA other downstream 2778653 8473490 ~ 8514955 (-)
G90939 LOC105903575 other downstream 3297013 7992137 ~ 7996595 (-)
AMCG00017563 NA other upstream 188224 11504024 ~ 11506820 (-)
AMCG00017569 NA other upstream 561560 11877360 ~ 11900600 (-)
AMCG00017582 NA other upstream 991981 12307781 ~ 12322370 (-)
AMCG00017631 NA other upstream 3117358 14433158 ~ 14484818 (-)
AMCG00017638 scoc,LOC103463814,LOC103132857 other upstream 3444268 14760068 ~ 14764832 (-)

Expression


Co-expression Network