AMCG00017560


Basic Information

Item Value
gene id AMCG00017560
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 11390189 ~ 11402671 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017560
ATGGAGACATTTACTTTGCATGACATGCTTTTAAACTCCACTGATATGAACAAGATTTTATGTCGGCTGGGAATGAAGAATGACTCGGAGTGCGAGGGACCTGAGGAGCAGCCGCAGCCTAAAGATATGAATCAGAATGTACGGATACTTCTGTACAGCTTAATATTCTTGCTCAGTGTGCTTGGAAATTCCCTGATCATTGCTGTCCTGGTGAGAAACAAGCGGATGAGGACAGTGACGAATATCTTCCTGCTGTCCTTGGCTGTCAGTGACTTGATGCTCTGTCTCTTCTGTATGCCTTTCACCCTAATCCCAAATCTGATGAAAGACTTTATATTTGGCAGTGGGGTCTGCAAAGTGGCCGCATACTTCATGGGTATATCTGTGAGTGTATCTACCTTCAGCCTGGTTGCAATCTCCCTGGAGCGCTACAGTGCGATCTGTAATCCTCTACAGTCCAGAGTCTGGCAGACCAAGTCCCATGCCTTTAAAGTCATCACAGTGACATGGGTTGTGTCCTTTATCCTAATGCTGCCATACCCAATCTCCAGCACCCTGGTGCCCTTCACAAGAGACAATAACAGCACTGGTAATATGTGCCGTCTATCCTGGCCCAGTGATGTTATTCAGCAATCCTGGTACGTTTTCCTGTTACTGATTCTCTTCCTCATCCCTGGAGTTGTAATGATGACGGCATATGGATTAATCTCACTTGAACTCTACAGGGGAATCAGATTTGAAATAAACCACAGAAAGTCTAACCGAGAAAGGAaggtcagcagcagcagcagcagcatcaaaCACATGGATAGCGATGGCTGCTACATCCAGAAATCCAAGAAGAAAAGAGTGGAAATGCAGCCGCTGCCCTGCGCCAACAGCAAGACCAAGGTCAGCAGGGTGAGGAGCAACAGCTCGACTGCCAACCTGATGGCGAAGAAGAGGGTGATCCGCATGCTGATCGTCATCGTGGTGCTGTTCTTCATGTGCTGGATGCCCATATTCACCGTCAACGCCTGGCGGGCCTTCGACAGGCTCTCCGCGGACAGACTGCTCTCCGGGGCACCCATCTCCTTCATCCACCTGCTGTCCTACACGTCGGCCTGCGTCAACCCCATCATCTACTGCTTCATGAATAAGCGTTTCCGGCGCGGCTTCTTGGCCACCTTCGCctgctgtaataaaaaaaacatctttgcgCACGATGTGGAAGAGGACGGACCCATCACGGGCGGGAGTCTTTCCAGGATTACTTACAGCAACATCAGCATATCAGCCCAGGCATAG

Function

GO: NA

KEGG:

id description
K04194 CCKAR; cholecystokinin A receptor

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017560 True 1287 mRNA 0.49 5 11390189 11402671

Neighbor

gene id symbol gene type direction distance location
AMCG00017552 NA coding upstream 1494756 9893228 ~ 9895433 (+)
AMCG00017553 NA coding upstream 1721213 9630401 ~ 9668976 (+)
AMCG00017551 NA coding upstream 2017994 9257206 ~ 9372195 (+)
AMCG00017545 NA coding upstream 2242850 9127763 ~ 9147339 (+)
AMCG00017544 NA coding upstream 2286986 9086577 ~ 9103203 (+)
AMCG00017561 NA coding downstream 105205 11507876 ~ 11525014 (+)
AMCG00017562 fbxl5,LOC106674637 coding downstream 464494 11867165 ~ 11879473 (+)
AMCG00017577 NA coding downstream 621585 12024256 ~ 12024505 (+)
AMCG00017578 NA coding downstream 621862 12024533 ~ 12029958 (+)
AMCG00017575 NA coding downstream 696319 12098990 ~ 12118066 (+)
G91363 NA non-coding upstream 98613 11290288 ~ 11291576 (+)
G91361 NA non-coding upstream 102026 11287861 ~ 11288163 (+)
G91353 NA non-coding upstream 322174 11067713 ~ 11068015 (+)
G91341 NA non-coding upstream 599521 10790302 ~ 10790668 (+)
G91339 NA non-coding upstream 600300 10789598 ~ 10789889 (+)
G91386 LOC106577485 non-coding downstream 5623 11408294 ~ 11415102 (+)
G91387 NA non-coding downstream 13850 11416521 ~ 11416740 (+)
G91480 LOC107549164,LOC106560248,LOC106584219 non-coding downstream 532956 11935627 ~ 11935961 (+)
G91481 NA non-coding downstream 533430 11936101 ~ 11936339 (+)
G91490 NA non-coding downstream 572738 11975409 ~ 11975612 (+)
G91281 LOC103376870 other upstream 1806909 9519773 ~ 9583280 (+)
AMCG00017527 tkfc,LOC107731922,LOC107095500 other upstream 2625286 8751713 ~ 8764903 (+)
AMCG00017526 paics,LOC107555752 other upstream 2689435 8687697 ~ 8700754 (+)
G90955 NA other upstream 3257335 8132368 ~ 8132854 (+)
AMCG00017508 NA other upstream 3576550 7806378 ~ 7813639 (+)
G91452 cc2d2a other downstream 476943 11879614 ~ 11880499 (+)
AMCG00017600 NA other downstream 1794224 13196895 ~ 13259760 (+)
AMCG00017615 sorcs2,LOC106577493,LOC107590992,LOC107656200,LOC107722411 other downstream 2378595 13781266 ~ 13830819 (+)
AMCG00017620 htra3,LOC106577909 other downstream 2622965 14025636 ~ 14039063 (+)
G92046 NA other downstream 3674654 15077325 ~ 15084278 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_035206 CCKAR coding NC_007118.7 CM002891.2 62229075 ~ 62244744 (-)