AMCG00017561


Basic Information

Item Value
gene id AMCG00017561
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 11507876 ~ 11525014 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017561
ATGCCTTTCAACCTCCATTTCTGCGTCATCTACGTACTGTGCAGTGTTTGTCTTTTAGCACTGGTTCAATTGCCAGTTGTTTGCCAGGACTCATCACACACCTCATCAGTTGCTCCACATCCTGGTGAAAGCCCAGGGAATGGTGATTTTATTGAGTTTGATTATGATCCAGATGTTGTCATCGATAACTACAGCCTCTTGGTTCGATATTTGTGCTCAAGGCCTTGCGCTGttcttgttgatgttgttgctTCTTCAGAGTTAAGAACTGGAGTCGTTATCTACAAGAGAAGATGGAGAAATGAGAAACTCCTTAATACCAGGAGAAGTCGAACAGTTTTACTGAAGTTTCCAAGCATTATAGCTTATAGGGAGGACTTTTTCATTAGACACTCAATTGACATTCATGGTGTGATGCTGAGGGCCTGGATTGTTCACATACAGGGGTACAATGAAAGCAGTGGGATTGCACAGTCCTATCATCAGGCTGTGGCAAAGGCCTTTCAGGTTTTGAACGCTATCTTGCCCATTCAGCGTCCTTTAAAAAACCACAGGAAGTGTCTTCGGTGGGATGTGGAACAAACGTGGCAGTTTACTAAAAATAAGATCCCCCAGTGCCCTCGTGAATCTGTACCGGAGAGAGATTTGGAGTTATCCGAAAGTTTGATTGCTTCATCAACAAAAACTTTGAAAGTACCAGAATTCAAAGAGTTTGTGATCCCAGtttggatTTATCTACTTAATTGGTGTACAAGTAGAATCTGTGCAATTGTTCACCACGTGGATAACAACAATTTGTTCAAAACACCTTTGCTATTGCTAACAGACAAAGGGGAAATCGTCATTCAGGTCCATCTTGAATCAGGGCAAGACAGCGCTTTCAAATCATTCACAGGACTCTCCCTGAGGATGTGGTACCGTTTAGATATGTCTCTGGATGGAAGAAAGGTGATGCTGAGTGTAATTTCTTGGAAGACAATGAAAGAAACGgtagaaaataaacattcataCGTATTTGGTGAAAATATACTCTACAATGACACCTCTGGATACTTTGTAATCGGAGGCGGCAGATATTTTCAGAGCATACAGGGCTTTTTTGGACCAGTGAAGTACTACCGCCTGAAAGCAAAGCTGGAGAATTCGGTTGTCAACCCGCTTTTCCCTCCGAGTATTTTACAGGAACTAGATCACAAATATCAGAATTGTGAAAGCATTAAAGAAATTATCCCAGTTTTTCTGAAGATATATGAAAGTAACAGATTTGTTACAGATAAAAgTACCTGTGAATCCTATATTTcctatttaaataacaaatttgGCAGGCGTCCTGTTTGTGATCAGCCGTGGAGCTGggaaatgcaaataaagcaCCTAACTCTTTTCAGCCTTCTTCAGACAATGGAGCTTGACCTAttttttggTTCCTCGGATATGGATGTCACATTGCAATTTGGGAGGCAGGTTTTTGAAATGGTTTCTGAGAGCCTAAGCAGTCATGGAGGTCTAGGATTTGTACGCTCTATGATCCCATACTTACAGATCTCCAGCTGCTGCGGCTATCACAGGGCATCATACTTCTTGGCTGTCATTCACGAGGCAGGCTTAGGGGTGCCAGTGGACTCACTCCAGGGATATGTCTATAGTTTAATTGGTGCACAGGGAGATGAACGACTGTCTCTTCTGCATCTTGGTTACGTGCACATGCAAGGCATTGATGGGTATCCTCGGGATTACGATCTCTCGTACAGTTACTATGTTAATCTTGCCAAACAGACTTGTGTGGATCGGTGGAAAGTAGAAGAAACAGAACAATGCACCACTGAACACATTCACCTGACTGATGAATTAGCACTAAAATCTCAGACCAATGAGAAAcatgatatatattattatctaAACTATCAAGCACAACGAGGAGATGTGGAAGCCCAGagAACCTTAGCAAGAATGTTGTTTTGGGGACAACAAGGAGTGTCAAAAAATATTGAAGCTGCGGCAAAGTGGTATGCCCAAAGTGCTCTTCAGATGAAAGATGCTCAGGCAATGTATGACTTctctattgtattatttaagGGATTGGTTAAAGCCATCAATGGGTTGGGATGGTATTATAGCACCTATAAAGCAGATATGAAGACAGCAGTGAAGTACTTTGAAAAAGCTGCACAAAATGGAAGCAGAGATGCAATATATAATTTGGGAATATTACATCTAAATGGACAGTACCCAGGAAAGCCAACAAAGAATGAGTCAGCAGCTTTCCAGCACTTCTATAAAGCTTCTCTCCTTGGACACGTTGATGCCATTGTTGAAACATCTCAGTACTACTGTACAGGGAACCTAGACAACTTCACACGAAATCCAGAAACAGCTGTCCTGGAAGAAGCCCTTCTGAATTACCTTTTAGCTGCTGAGGCTGGGATTGAAGTAGCACAGACCAATGTCGCTCACATGTGTGAGGAGAACCCTgacTTGGGGCGGCATCATTTCTCCACTTATGATTGTGAATGGAGATACTATAATCATTCCACTTTTAATTACTTAGGTTCCTCATATGGGTTTCTGAAAATGGGAGACTATTATTACTATGGACACAATAATCAGTCACAAGACATTGAGATGTCCATTTTAATGTATGCAAACGCTGCTCTAACTGACAGCTCTCAGggAATTTTCAACTTAGCAGCCATAATTGAAGAGGGTCATGAAATTCCTGAAATAATTTTTAACAAATTAGGAATTAATAAAGCTGACCAGCTGGAAAGAACTGCTGTCTTAGAGAATCTTTATAGAAGCTTTGTTCAGTGTCCAGGTGAAAGTGGCTtggaaaaaaattatgaatCATCCGGTGCAGGCATCCTTGGTGACACTATTCAGGAGCAGGGGGATATCACCAGAAATGTTCAGGAGAATGAGAACACAGATGAGGAGCTGCACGTTTCTTCTACTGACACTCCAGCTGAGAACCATAGGAACTCTGGGCTGGATTTAATCAGGTGTAGAATCAATCAGTTGACTGAAGCCGTACCCAACCTGCTGTACAGCCAACATTCAATCTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017561 True 3063 mRNA 0.42 22 11507876 11525014

Neighbor

gene id symbol gene type direction distance location
AMCG00017560 NA coding upstream 105205 11390189 ~ 11402671 (+)
AMCG00017552 NA coding upstream 1612443 9893228 ~ 9895433 (+)
AMCG00017553 NA coding upstream 1838900 9630401 ~ 9668976 (+)
AMCG00017551 NA coding upstream 2135681 9257206 ~ 9372195 (+)
AMCG00017545 NA coding upstream 2360537 9127763 ~ 9147339 (+)
AMCG00017562 fbxl5,LOC106674637 coding downstream 342151 11867165 ~ 11879473 (+)
AMCG00017577 NA coding downstream 499242 12024256 ~ 12024505 (+)
AMCG00017578 NA coding downstream 499519 12024533 ~ 12029958 (+)
AMCG00017575 NA coding downstream 573976 12098990 ~ 12118066 (+)
AMCG00017576 LOC106589762 coding downstream 604649 12129663 ~ 12130950 (+)
G91387 NA non-coding upstream 91136 11416521 ~ 11416740 (+)
G91386 LOC106577485 non-coding upstream 92774 11408294 ~ 11415102 (+)
G91363 NA non-coding upstream 216300 11290288 ~ 11291576 (+)
G91361 NA non-coding upstream 219713 11287861 ~ 11288163 (+)
G91353 NA non-coding upstream 439861 11067713 ~ 11068015 (+)
G91480 LOC107549164,LOC106560248,LOC106584219 non-coding downstream 410613 11935627 ~ 11935961 (+)
G91481 NA non-coding downstream 411087 11936101 ~ 11936339 (+)
G91490 NA non-coding downstream 450395 11975409 ~ 11975612 (+)
G91545 NA non-coding downstream 910730 12435744 ~ 12435984 (+)
G91549 NA non-coding downstream 965069 12490083 ~ 12490296 (+)
G91281 LOC103376870 other upstream 1924596 9519773 ~ 9583280 (+)
AMCG00017527 tkfc,LOC107731922,LOC107095500 other upstream 2742973 8751713 ~ 8764903 (+)
AMCG00017526 paics,LOC107555752 other upstream 2807122 8687697 ~ 8700754 (+)
G90955 NA other upstream 3375022 8132368 ~ 8132854 (+)
AMCG00017508 NA other upstream 3694237 7806378 ~ 7813639 (+)
G91452 cc2d2a other downstream 354600 11879614 ~ 11880499 (+)
AMCG00017600 NA other downstream 1671881 13196895 ~ 13259760 (+)
AMCG00017615 sorcs2,LOC106577493,LOC107590992,LOC107656200,LOC107722411 other downstream 2256252 13781266 ~ 13830819 (+)
AMCG00017620 htra3,LOC106577909 other downstream 2500622 14025636 ~ 14039063 (+)
G92046 NA other downstream 3552311 15077325 ~ 15084278 (+)

Expression


Co-expression Network