AMCG00017562 (fbxl5,LOC106674637)


Basic Information

Item Value
gene id AMCG00017562
gene name fbxl5,LOC106674637
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 11867165 ~ 11879473 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017562
TTGACAAGCGCTATGGCACGTAGGCTCTAGTGTACCCTCATCATGTGACAGGGAAATGAGTATGGCTCCCTCGTAGATGGCATCACCTGTCTGAAGTCTGCACATCTCTCGGCTGCTAGTAGCGCAGTTCTTGCTGTTTCCATGGAGTAAAAATGGCTCCTTTTCCTGAAGAGGTGGATGTTTTCACAGGCCCACACTGGCGGATGAAACAGTTAGTGGGTCTTTATTGTGACAAGctgTCCAAGACCAACTTCTCCAACAACAACGACTTCCGCTCGTTTCTCCAGTCGCTCTGTGCCACCTTCaaagaatttaaaatgcatgaacaaATTGAAAACGAATACATCATTGGATTGCTGCAGCAACGTAGCCAGACTGTGTATAATGTCCATTCTGACAACAAGCTCTCCGAGATGCTCAGTCTCTTCGAAAAGGGACTCAAAAATGTTAAGaatgAATACGAACAGTTGAACTACGCACAGCAGCTGAAGGAGAAGCTTGAGGCTTTTACACAGGATTTTCTTCCTCATatgaaagaggaagaggagGTGTTCCAGCCAATGCTGATGGAGTACTTCACCTATGACGAGCTGAAGGACATCAAGAAGAAGGTGATCGCACAGCACTGTACACAGAGACGCTGTGACACCGTGGAGTTTTTGAAGGGACTCAGTCTCTGGAACCAGGCAGAGGAACTCCACAAAGCCTTCAAATACTCAGTGTTCAGATACCTCAGTCCAGAGGATCTGTGTCATTGTAGCCTGGTCTGCTCTGCCTGGTCAGAAGTGGCAAAGACTGGATCCCTTTGGAAACATCTGTATCCAGTGCGCTGGGCGAGAGGTGATAATTACAAAGGACCTCCTGGAGATCTGGATCAGGAACCAGACGATGAGTGGGTCAAGAGCCGAGAAGATGAGGGCAAGGCTTACCAGGAATGGGATGAAGATGCAGATATTGATGAAACTGAGGAGGGTTTTAAAGACTCTCCAGCCATTACTGtagtgcagagagagaagagtCTGTTGTATGGAATGATTCAGCATCTGCTCCCAGTGGTTGGATCCTCCGTGAAATCTGTGGTTTTGGCTTATAGTTCAGCTGTCTCCAGCAAAATGGTACGACAAATATTGAGTCTTTGTCCAAACCTAATGCACTTAGATCTCACCCAAACTGATATCACAGATTCTGCTTTCGACAGCTGGTCATCTCTTGGGAGCTGCAAGACACTTGAACACCTAGACTTGTCTGGCTGTGACAAGATTACAGATATGATGCTGAAAAAACTCTCTCAGGGTCTTGGAGATCTCACCACACCCGatgaaaatgaaggaaaaggGGGACTTTCCAAAAAGTGTCGAAAGATTTTAAAGGGGCAACAGCCGATCAGCCTGCAGCCAAGTCTTGAATGTGGCCTCCCAGTCCGCAGTCATCAAGCTCTGATCTTCAAGAGGAAACCGGGAGGGCAGGCGACGGTCCCATCTCAGGTGTGGGTGTTGGATCCTGTCAATTTGGTCGATATTGAAGACGCAGCCGAGTGGAAGCAAAAAAGCAATGAAGGACTTGGTTTTGGAATGAAGGACTTGGAATCTCCGCCATCTAACAACTCTTGCTGCTGCAGAAGAAGCAAGTTTGGCTTCAGGACTAGTGCCTATTGGCAGCAGTATGCCACCTCCGCTGCGGAAGTGAGGTGTGGCCACTCGTTCTGTTGCAACGAGAAAGCTTTGCGGACTATTGGGCCACTGCCAGAGCCCCCTGCACTGTGCAATGCAGTGTTACGGACTAGGCCATCCGAGGATAAGGACTTGGTTTGCTCTCGGAGTGAAAAAAGAACTGATCAACCTGAGGCGTGTCGCACTTTGAGATTCCTCAGTTTGTCAGGATGCTATCAGATCACAGATCTTGGCCTAAGAGTGCTGTCTCTGCGGGGGGGTCTCCCTCATCTGGAGCACCTCAATCTCTCCGGCTGCCTCCGCATCACTGAAGTGGGGCTTCAAGAGCTGGTCTCGGCCTGCCCCTCTCTGAACGATGAGCACTTTTATTATTGTGACAACATTAACGGTCCCCATGCTGACACTGCCAGCGGATGTCAGAATCTGCAGTGTGGTTTCAGAGCCTGCTGCCGTTCTGGGGAGTGATCCCCACCCTGCCCTCCCTCTTGTAATACTTCTGTAGCTGTATATGCTTCCATAATGCACTTTACACTAGGAATACCATTCAATGTGATTTCTTTCACTTCTAAATGTTGTACATTGAGAAAAGGAAAGGGTTTGTCTTGGGATACAGGTTCTCCTATTTTTGCCTTTGCAGCTGTATTATAAGAGATGCATCTGAGAAATTGTTTATCattgctgtttgtttattttatctgcaTCAATAGTAAAGTTCAAggtagatgtatttttttctcgCTTCATTTGAATTCATGCTTTTGGGAGAGTCCGAACTGGAAGAAATGAACTAGAATCACTTATAGGgagatatttaatttgaattattatagAATAAAATCCATTCTTGGGCACAGAGATGAAGACAAAACTGTTGAACAGCCATGCttcacatttgaattaaatgtaaataattatatttgtggGGAAATACTTGATTCTGATCAGTATAAGGAAATATTAAggcttttctgaaataaaatgtgttttagacATAGCAAAGATTGGGGAGCTAGTTATTTCATGACTTCTAGGAACTCTTTTCTCCTTGCTGGTGTGACCTTGATTTGATCATTGCAACACTGAGCTAATTTTGGATTATCTGAGCAAGTTGTTACAGGACTCAGGACTCGGTCATTTGTAGATCTATAGCTTTTTTCTTCATGTCTAAGCTGCTCCATGGGGATCTAATGTTGTTTTCTGAATTAGATTTTTACTTGCCCAAACATGGATTCTCCCTTAAAATAGAATTTAGTCAAACAAATTCTCATGATCTTTCAAAGTTCATGATTGAATTGTAAGTAACTGGCTACTGCTAAAGGGTTATAAAAACAGTGTGATTATAAATCCCAACATGTTTATAGTTTGGGCTGCAGTGATTACATTTCTGTAAGAATATGGCCTTTTGAAAGACCCAGACATGCATCTTGACTCTCAATTACTTTGCTGAACCTACAAAAACTAATATACAACAATAGGTTCTTATACAGAGACTGTTAATGGACTCCAGAGTAGTGGCGGAGGCTCCCTACTATCAGTGCTGATTTATGGATCATTGGTTtcttaaattacaattacaaataaaacaagtcagattcatttgcattgttttgttctgttctgttcactACAATTAAcctaaaatgtgtatattttctttgtatagACAGGaacttgttttctgtatttgttttgaaatttgtTTGGCACGGTATAATATCTATAGAGTCCAGCTTGTGCACACAGGTCTTGTAACCCTTCTATTTAAGGATTTTAATGTCTAACTTCTCTGATTTcctagttttattttaagtctcATGATTTATCCATTTGATAGTCCtcttttgaattttgttttaatcaggtAATATGATgctttataaaaatatgcatttaattttcatgtttgtgtgcaGGACCAATGTTGGAGACTCTTTTGCATGATAACATTGTCTAATGACAGAGTTCTGCCCAAGGAAGAACATCCCAACAGATGCGAACTGTCATTCAGCTGAAAAGAGAGGGAGTATTCCTCCACAGTTCACATAGATTAACCGGTAAGGGACACAGATAGTCGGGTTGTTTGCTGCAGTTGGGCAGAGTCCTCAAGGCTATTAAACTCCTTCCTAGGAGAAACCATTTCACTAGTTCTGTGTGAAATCCAG

Function

symbol description
fbxl5 Predicted to enable iron ion binding activity. Predicted to be involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process; iron ion homeostasis; and protein ubiquitination. Predicted to be located in perinuclear region of cytoplasm. Predicted to be part of SCF ubiquitin ligase complex. Orthologous to human FBXL5 (F-box and leucine rich repeat protein 5).

NR:

description
PREDICTED: F-box/LRR-repeat protein 5

GO:

id name namespace
GO:0055072 iron ion homeostasis biological_process
GO:0016567 protein ubiquitination biological_process
GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process biological_process
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0019005 SCF ubiquitin ligase complex cellular_component
GO:0005506 iron ion binding molecular_function

KEGG:

id description
K10271 FBXL5; F-box and leucine-rich repeat protein 5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017562 True 3832 mRNA 0.43 11 11867165 11879473

Neighbor

gene id symbol gene type direction distance location
AMCG00017561 NA coding upstream 342151 11507876 ~ 11525014 (+)
AMCG00017560 NA coding upstream 464494 11390189 ~ 11402671 (+)
AMCG00017552 NA coding upstream 1971732 9893228 ~ 9895433 (+)
AMCG00017553 NA coding upstream 2198189 9630401 ~ 9668976 (+)
AMCG00017551 NA coding upstream 2494970 9257206 ~ 9372195 (+)
AMCG00017577 NA coding downstream 144783 12024256 ~ 12024505 (+)
AMCG00017578 NA coding downstream 145060 12024533 ~ 12029958 (+)
AMCG00017575 NA coding downstream 219517 12098990 ~ 12118066 (+)
AMCG00017576 LOC106589762 coding downstream 250190 12129663 ~ 12130950 (+)
AMCG00017581 rab28,LOC106600633 coding downstream 268796 12148269 ~ 12158241 (+)
G91387 NA non-coding upstream 450425 11416521 ~ 11416740 (+)
G91386 LOC106577485 non-coding upstream 452063 11408294 ~ 11415102 (+)
G91363 NA non-coding upstream 575589 11290288 ~ 11291576 (+)
G91361 NA non-coding upstream 579002 11287861 ~ 11288163 (+)
G91353 NA non-coding upstream 799150 11067713 ~ 11068015 (+)
G91480 LOC107549164,LOC106560248,LOC106584219 non-coding downstream 56154 11935627 ~ 11935961 (+)
G91481 NA non-coding downstream 56628 11936101 ~ 11936339 (+)
G91490 NA non-coding downstream 95936 11975409 ~ 11975612 (+)
G91545 NA non-coding downstream 556271 12435744 ~ 12435984 (+)
G91549 NA non-coding downstream 610610 12490083 ~ 12490296 (+)
G91281 LOC103376870 other upstream 2283885 9519773 ~ 9583280 (+)
AMCG00017527 tkfc,LOC107731922,LOC107095500 other upstream 3102262 8751713 ~ 8764903 (+)
AMCG00017526 paics,LOC107555752 other upstream 3166411 8687697 ~ 8700754 (+)
G90955 NA other upstream 3734311 8132368 ~ 8132854 (+)
AMCG00017508 NA other upstream 4053526 7806378 ~ 7813639 (+)
G91452 cc2d2a other downstream 141 11879614 ~ 11880499 (+)
AMCG00017600 NA other downstream 1317422 13196895 ~ 13259760 (+)
AMCG00017615 sorcs2,LOC106577493,LOC107590992,LOC107656200,LOC107722411 other downstream 1901793 13781266 ~ 13830819 (+)
AMCG00017620 htra3,LOC106577909 other downstream 2146163 14025636 ~ 14039063 (+)
G92046 NA other downstream 3197852 15077325 ~ 15084278 (+)

Expression


Co-expression Network