AMCG00017563


Basic Information

Item Value
gene id AMCG00017563
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 11504024 ~ 11506820 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017563
GTGTTCGTGCAGGTGACCGAGGCTGGTTCGTCCTTCTTGTCCGCTGCACCGCAGACATGTCTAGGAACACCAGAATCACTGTGATATTCGGCGGTTTTGTCGCAGCTGTTGCGGCCGCATTTTACCCCATATTTTTCCACCCTCTCACGCATGTCAGCGAATACAAGAAAGTCCAGCAAGAGAACAGAGAAGGAATCAATCAACAGGATGTCCAGCCAGCAGgagTAAAGATATGGTCCGATCCCTTCAAATCGAAGTGAAGCCTCATTGACAGTGAGGGAATAGCTGAGCAGATGCGCGCTGGTACTGTGGTACACCCCTACCCAGTGAAGAAAGTGGAGAAGATTACCTACTAcatcatgtataaaaatgtgggggtgctttgtttttttccttttctttttacatgAAAGAGGTTGAGCTTTGGCTTTTACCTCTGATGTTAAATCCACTGAGATGTGAATCTCCTGAAGGACGATGTTCAGATTGTATGCTGCAGTACAAGAGTGCGATGCATTCAGGCGTTACAATATGTGGACTCTATGAGCATCAGCAACTACTAAAGGCCCCACCGGTGTTGTCTTCAAATATAGCAACTATGACTCTTATTTATACCGTTTAGCCAAGCTTCACAAACTGATCACAACATCTAAAAGTAAACCACGTATGAACAGCTAAAACGAAATGTCGACACTAATccatcacatttacatttacaaattgaaTCGCCTCATTGTCAGAAATCATGTTTAATATACACAGTGTTTGAATAATTCATAATCTTTGCATTCCCTGCCTGtatccaaatatatataacaatcaaatgatgctatggaaagactggtttgaatCTTAAGTTGTATCGTTAGTGCACTGTGACCAGGGTTGGCCATGGTATTCAATGATGTGTGAAAATAAGTTAAAGCTGTAAACTGTAAGTATTGAAAGAAGACTAACTGGcaaatcattgtttttcttttttcaatttttttggaTAATAAAAGTTTTGTGCTGAGAAGTGATTTTTTTCTACCATAAATAAACTAGGAGCATagatatttacaaaaaagtTCCTTAAATTTGCAGAGACATTTAAGACTGATTTGAAAGCAAATGGTTTCTCCTGCACTCTTCATACTTCAACTTTTTTCTCAAGCACGGTCTCGTTAGTGCTTTAGGTAACATCCCAAAAGTCTTGTAAAGAAAAGGTTAAAtgaaagaaatctgaaaaagtGTGCTTGCATTGCACATTTTAACAATTGGTGTCTGCTTCCATGGCAGACAGGTTTGCCTTTACtgattaatttctaaaatatcCAGCTCCTTAGCTACATGTCAAGGTGTTGAAACCTACATCTATTAGTCTTTAATTTCCTCTTTGCTCAGTTTTAGAGGCGGTTTTCCATGCTTGCTGAAGTAAAGGTCAGTGAGTTGCCCCTGCTCTTGGTTGCACACTCTTGTGTATGTCGCTGTTACTTATTTGAGAGATCTAATTTCACTTGTATGTTACAAAAGATAATGACAACACATTAAATCTTTCAAACTAGcagctgtattatttattccttcGAGAAACTCAATTTATGTTCCCAAAGAAGTTAATCAAATATTGGCTAAAATAGAAGTTAAGAAAAATGCcttaatatatgtaatatatgtaatgatagttttactttttaagattgctttgaatttcaaaaaatgtaaaaaaaaatttgaGGCATTTGTTTCTGAAGCAGATTTTCAGGAAAAGCAGGAATGTGTGCCAATGTAATTAAAGTACTGAAAACAGACACGTGGCTCTCTAGAATGCTGTTTTGCCAGAAATTAGACTGGAaaggtttttgtgtgtttattttgctacTTTGAATGAATTTCACTTTATTCTAAGTCTGATTATTCAGATGTGCAGTTtgcataaataatgcaaaacaaaacaacctaaaCATTAATTCAACCATTTCAGTAATGCTTTGGgattaaatgtgaatgtaataTGAAATTGGTGTTGTCTTCACTAATCAAAGTACTTTTAAAAGTCC
>TU114018
ACCGAGGCTGGTTCGTCCTTCTTGTCCGCTGCACCGCAGACATGTCTAGGAACACCAGAATCACTGTGATATTCGGCGGTTTTGTCGCAGCTGTTGCGGCCGCATTTTACCCCATATTTTTCCACCCTCTCACGCATGTCAGCGAATACAAGAAAGTCCAGCAAGAGAACAGAGAAGGAATCAATCAACAGGATGTCCAGCCAGCAGgagTAAAGATATGGTCCGATCCCTTCAAATCGAAGTGAAGCCTCATTGACAGTGAGGGAATAGCTGAGCAGATGCGCGCTGGTACTGTGGTACACCCCTACCCAGTGAAGAAAGTGGAGAAGATTACCTACTAcatcatgtataaaaatgtgggggtgctttgtttttttccttttctttttacatgAAAGAGGTTGAGCTTTGGCTTTTACCTCTGATGTTAAATCCACTGAGATGTGAATCTCCTGAAGGACGATGTTCAGATTGTATGCTGCAGTACAAGAGTGCGATGCATTCAGGCGTTACAATATGTGGACTCTATGAGCATCAGCAACTACTAAAGGCCCCACCGGTGTTGTCTTCAAATATAGCAACTATGACTCTTATTTATACCGTTTAGCCAAGCTTCACAAACTGATCACAACATCTAAAAGTAAACCACGTATGAACAGCTAAAACGAAATGTCGACACTAATccatcacatttacatttacaaattgaaTCGCCTCATTGTCAGAAATCATGTTTAATATACACAGTGTTTGAATAATTCATAATCTTTGCATTCCCTGCCTGtatccaaatatatataacaatcaaatgatgctatggaaagactggtttgaatCTTAAGTTGTATCGTTAGTGCACTGTGACCAGGGTTGGCCATGGTATTCAATGATGTGTGAAAATAAGTTAAAGCTGTAAACTGTAAGTATTGAAAGAAGACTAACTGGcaaatcattgtttttcttttttcaatttttttggaTAATAAAAGTTTTGTGCTGAGAAGTGATTTTTTTCTACCATAAATAAACTAGGAGCATagatatttacaaaaaagtTCCTTAAATTTGCAGAGACATTTAAGACTGATTTGAAAGCAAATGGTTTCTCCTGCACTCTTCATACTTCAACTTTTTTCTCAAGCACGGTCTCGTTAGTGCTTTAGGTAACATCCCAAAAGTCTTGTAAAGAAAAGGTTAAAtgaaagaaatctgaaaaagtGTGCTTGCATTGCACATTTTAACAATTGGTGTCTGCTTCCATGGCAGACAGGTTTGCCTTTACtgattaatttctaaaatatcCAGCTCCTTAGCTACATGTCAAGGTGTTGAAACCTACATCTATTAGTCTTTAATTTCCTCTTTGCTCAGTTTTAGAGGCGGTTTTCCATGCTTGCTGAAGTAAAGGTCAGTGAGTTGCCCCTGCTCTTGGTTGCACACTCTTGTGTATGTCGCTGTTACTTATTTGAGAGATCTAATTTCACTTGTATGTTACAAAAGATAATGACAACACATTAAATCTTTCAAACTAGcagctgtattatttattccttcGAGAAACTCAATTTATGTTCCCAAAGAAGTTAATCAAATATTGGCTAAAATAGAAGTTAAGAAAAATGCcttaatatatgtaatatatgtaatgatagttttactttttaagattgctttgaatttcaaaaaatgtaaaaaaaaatttgaGGCATTTGTTTCTGAAGCAGATTTTCAGGAAAAGCAGGAATGTGTGCCAATGT

Function

GO: NA

KEGG:

id description
ko00510 N-Glycan biosynthesis

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017563 True 2042 mRNA 0.37 3 11504024 11506820
TU114018 False 1757 lncRNA 0.37 3 11504294 11506805

Neighbor

gene id symbol gene type direction distance location
AMCG00017566 rbpj,LOC106577485 coding downstream 80079 11414328 ~ 11423945 (-)
AMCG00017572 LOC108228807 coding downstream 116612 11356805 ~ 11387412 (-)
AMCG00017557 stim2 coding downstream 188224 11293608 ~ 11315800 (-)
AMCG00017558 NA coding downstream 554315 10948110 ~ 10949709 (-)
AMCG00017559 NA coding downstream 556019 10947746 ~ 10948005 (-)
AMCG00017571 NA coding upstream 24290 11531110 ~ 11536385 (-)
AMCG00017570 prdm5,LOC106560247 coding upstream 235664 11742484 ~ 11770097 (-)
AMCG00017564 ndnf coding upstream 278820 11785640 ~ 11796072 (-)
AMCG00017573 NA coding upstream 295823 11802643 ~ 11810656 (-)
AMCG00017574 NA coding upstream 336661 11843481 ~ 11851614 (-)
G91381 NA non-coding downstream 106293 11397520 ~ 11397731 (-)
G91371 NA non-coding downstream 212790 11290328 ~ 11291234 (-)
G91362 NA non-coding downstream 215861 11287855 ~ 11288163 (-)
G91359 NA non-coding downstream 235429 11268106 ~ 11268595 (-)
G91355 NA non-coding downstream 352326 11151378 ~ 11151698 (-)
G91466 NA non-coding upstream 321188 11828008 ~ 11829693 (-)
G91467 NA non-coding upstream 324613 11831433 ~ 11833898 (-)
G91539 NA non-coding upstream 834622 12341442 ~ 12341735 (-)
G91553 NA non-coding upstream 989471 12496291 ~ 12499947 (-)
G91556 wdr1,LOC107717326,LOC106583413 non-coding upstream 999807 12506627 ~ 12509143 (-)
AMCG00017556 NA other downstream 1006920 10361300 ~ 10497104 (-)
G91119 NA other downstream 2748117 8755288 ~ 8755907 (-)
AMCG00017531 NA other downstream 2755281 8732760 ~ 8748743 (-)
AMCG00017520 NA other downstream 2989069 8473490 ~ 8514955 (-)
G90939 LOC105903575 other downstream 3507429 7992137 ~ 7996595 (-)
AMCG00017569 NA other upstream 370540 11877360 ~ 11900600 (-)
AMCG00017582 NA other upstream 800961 12307781 ~ 12322370 (-)
AMCG00017631 NA other upstream 2926338 14433158 ~ 14484818 (-)
AMCG00017638 scoc,LOC103463814,LOC103132857 other upstream 3253248 14760068 ~ 14764832 (-)
G92124 LOC101154678 other upstream 4360127 15866947 ~ 15867647 (-)

Expression


Co-expression Network