AMCG00017564 (ndnf)



Basic Information


Item Value
gene id AMCG00017564
gene name ndnf
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 11785640 ~ 11796072 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>AMCG00017564
GATTGCTCCAGTTTGCTGCTCAATCCAGTCGGAGGCTCAATAGCATTAACACTGCAGGGGAGGGACTCTCTGCCCAATCCAGGATCCTACACAGACCCGGGACAAGCCAAATCCGCCCGATCCCTGACCAGCATCACACTCCTAATCCCATTGCCTTGACTAGACCTGACTCCAGGAACCTCCGAGACAGAAAAAGGACAACTTTATTCTGCTTTAATCCATCTGCACCCATTGATCTTTTCACCAGAATAAACCACCCCTCCTATTGAGATACTTCTGCTTTTCCCTTACCTAAGAGAGGCAgctttttaaagtgatttgCGTCTGTTAATCATAATCTGTAAGGATGAGAAGCTTCACTGGATCCTTCATCTTGTTACTGGTGCTTGCAGTAAGAGCCCAGAAGTTACCCACTAGGGATGAGGAACTCTTTCAGATGCAGATCCGAGACAAATCTCTTTTTCATGACTCATCTGTTATCCCAGACGGGGCTGAGATCAGTGGTTACCTCTTCAGGGACACACCCAAAAGGTATTACTTTGTTGTTGAGGAAGACAATACCCCTTTGTCAGTAACCGTGACACCATGTGATGCACCTCTGGAATGGACACTAAGCCTTCAAGAACTTCCTGAAGAGTCCAGTGGAGATGGCTCAGGTGAACCAGAACCACTAGATCAACAAAAGCAACAGATCATCAGTGAGGAAGGCACAGAGCTTTTTTCTTACAAAGGCAATGACGTTGAGTCCTATGTAGCGTCTAGTTCCCCATCTGGCTTATATCAGTTAGAACTCATCTCTACAGAGAAGGACACAAACTTCAAGGTGTATGCCACCACCACTCCAGAATCAGACCAGCCTTATCCTGAGTTGCCATATGATCCACGGGTGGATGTCACTTCCCTGGGACGCACCACCGTCACCTTGGCATGGAAACCTACCCCTACTGGTTCTCTGATGAAGCAACCCATCCAGTATTGTGTGGTCATCAACAAGGAGCACAACTTTAAAAGTCTTTGTGCTGTGGAGGGAAAATTGAATGCTGATGACGCATTTATGTTGGCACCCAAGCCGGGATTGGACTTCAGCCCATTCGACTTCTCTCACTTTGGATTCCCCTCAGAGAATGACTCTGGCAAAGACCGGTCTTTGGTGGGTAAATCAGTACCTGGAAAAATGTCTCGCTCATACACAACCAAGCAAAAAGTGGATCTCCAGAAAGTTTGTATAGGGAATAAGAACATCTTCACCGTGTCTGAACTGAAGCCTGACGTGCAGTActattttgatgtatttgctGTGAACACTGTTACTAACATGAGCACGGCATATGTTGGCACATTTGCCAAAACTAAAGAAGAGGCTAAGCAGAAAACAGTGGAGCTAAAAGACGGGAAAGTCACAGATGTGTTCATCAAGAGGAAGGGGAGCAAGTTCTTGAGGTTTGCCCCAGTATCCTCACACCAGAAAgtcatgttttatgttcattcTTGCTTGGATGCCATCCAGATCCAGGTGAGGAGAGACGGCAAACTCCTGCTTTCTCAGAATGTGGAGGGCGTACGCCAGTTCCAGCTGAGAGGAAAACCCAAGGCTAAGTACCTGATTAGACTGAGGGGCAGCCGGAAAGGGGCATCCATGCTGAAAATCCTCGCCACTACAAGGCCCAACAAACAGCCCTTTCCTTCTCTCCCCGAGGATACCCGAATTAAAGCCTTTGATAAGTTGCGCACTTGTACCTCCGTGACCGTGGCATGGCTGGGAACACAGGAGAGGAATAAGTTCTGCATTTATAAAAAGGAAGTAGACGACAGTTACAATGAAGAACAGAGGAAAAGAGAGCAGAATCAGTGTACAGGGCCAGAGACCAGGAAGAAGTCTGAGAAAGTCCTCTGCAAATACTTTCACAGCCAAAATCTACAGAAAGCTGTCACTACAGAAACAATAAAGGGCCTTGAGCCTGGCAAATCCTACCTACTGGATGTTTACGTTGTAGGGCATGGAGGCCATTCGGTCAAGTATCAGAGCAAACTGGTGAAAACAAGGAAGTTTTGTTAATGactctgaatatatatatatatatatatatatatatataaaaagtttatttaactCTAAGCGATATTCTACTAAAGAGTGTATACAGACTGACTACTCATGCAGCTGAGAGGCTGTGCCAGTATTTGAACTGTGTAGAAAGATATCAActtgtatatttatgtttacattatTCAGCGGTTGTTTGGACAGATTCGGAGTGGTGCTCCCAGACAGCACATGGCATTTGCGTTAACATGGGTCCATGTCTGACCATAACATCCAGTCCAGTGACGAGAAGGAACAAAGGGTTCAAGGCAGGAGAGTTCTCATCGACTTTCTTCATCACTGCATGACTTGCATTTCATCATTCGGTAGTACTAAGAAGTGCAGAGACAATTCATATAAAACTGTCTGCCTTGTTATTCACTCATACAAGTACATTTAATTCGTAGaagaattttaaattattttataaatttctgcctttttaaaatattattattataattttgaaaaattgtaaatctattaaaaagtaattgacCTTCAGATGTAATCTCAGAGTTTCCTAGACTGCATCTGGAAAGTTTCCTTTGCTATTGTAAATTTATTTCCTGTCATGTGATcgattaaatgttttattatgtctTTTATGTACAAAGTTGTTCTACAAATATTCATGtacataaaaactaaatatataacaattacaTATTGTGTGATATTTTTGGGAGTGGATGTTTTGGGTGCGTGTAAAGAAGttcacaaacataaaaatacagattttaaagaacattttgaatTCACTCTGCACAGCTGTGTATCTATTACATTTAACtccat

Function


symbol description
ndnf Predicted to enable heparin binding activity. Involved in gonadotrophin-releasing hormone neuronal migration to the hypothalamus. Acts upstream of or within embryonic neurocranium morphogenesis. Predicted to be located in extracellular region. Is expressed in central nervous system; cranial ganglion; hypochord; somite; and stomodeum. Human ortholog(s) of this gene implicated in hypogonadotropic hypogonadism. Orthologous to human NDNF (neuron derived neurotrophic factor).

NR:

description
PREDICTED: protein NDNF

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
AMCG00017564 True 2881 mRNA 0.42 4 11785640 11796072

Neighbor


gene id symbol gene type direction distance location
AMCG00017570 prdm5,LOC106560247 coding downstream 15543 11742484 ~ 11770097 (-)
AMCG00017571 NA coding downstream 249255 11531110 ~ 11536385 (-)
AMCG00017566 rbpj,LOC106577485 coding downstream 361695 11414328 ~ 11423945 (-)
AMCG00017572 LOC108228807 coding downstream 398228 11356805 ~ 11387412 (-)
AMCG00017557 stim2 coding downstream 469840 11293608 ~ 11315800 (-)
AMCG00017573 NA coding upstream 6571 11802643 ~ 11810656 (-)
AMCG00017574 NA coding upstream 47409 11843481 ~ 11851614 (-)
AMCG00017567 LOC108240206 coding upstream 108766 11904838 ~ 11907394 (-)
AMCG00017568 cpeb2 coding upstream 137179 11933251 ~ 11938533 (-)
AMCG00017565 NA coding upstream 159342 11955414 ~ 11973684 (-)
G91381 NA non-coding downstream 387909 11397520 ~ 11397731 (-)
G91371 NA non-coding downstream 494406 11290328 ~ 11291234 (-)
G91362 NA non-coding downstream 497477 11287855 ~ 11288163 (-)
G91359 NA non-coding downstream 517045 11268106 ~ 11268595 (-)
G91355 NA non-coding downstream 633942 11151378 ~ 11151698 (-)
G91466 NA non-coding upstream 31936 11828008 ~ 11829693 (-)
G91467 NA non-coding upstream 35361 11831433 ~ 11833898 (-)
G91539 NA non-coding upstream 545370 12341442 ~ 12341735 (-)
G91553 NA non-coding upstream 700219 12496291 ~ 12499947 (-)
G91556 wdr1,LOC107717326,LOC106583413 non-coding upstream 710555 12506627 ~ 12509143 (-)
AMCG00017563 NA other downstream 278820 11504024 ~ 11506820 (-)
AMCG00017556 NA other downstream 1288536 10361300 ~ 10497104 (-)
G91119 NA other downstream 3029733 8755288 ~ 8755907 (-)
AMCG00017531 NA other downstream 3036897 8732760 ~ 8748743 (-)
AMCG00017520 NA other downstream 3270685 8473490 ~ 8514955 (-)
AMCG00017569 NA other upstream 81288 11877360 ~ 11900600 (-)
AMCG00017582 NA other upstream 511709 12307781 ~ 12322370 (-)
AMCG00017631 NA other upstream 2637086 14433158 ~ 14484818 (-)
AMCG00017638 scoc,LOC103463814,LOC103132857 other upstream 2963996 14760068 ~ 14764832 (-)
G92124 LOC101154678 other upstream 4070875 15866947 ~ 15867647 (-)

Expression



Co-expression Network