AMCG00017565


Basic Information

Item Value
gene id AMCG00017565
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 11955414 ~ 11973684 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017565
ATGGGGGATTACGGGTTCGGCTTGTTACAGACAGCCAACATTAACAGCAGCTCCGCGGGCTTTGCAGGAAGCGCTTTCAGGTCGTACGCGACGTCCCCCCCGGCTGCCAGCGGCCAGCTCTCCTCCCTCAGCCCCGGCAGCGGCGCCGCCACCGTGTCCTCTCTGTTCCTGTCAGCGGCTGCGCACCATCAAAACATGCAGGATGAGCTTCTTCTGGGGGTGACCACGTCCACGTCCACGTCcacgcagcagcagcagtcccCGTCCGCCGACAAGACCCACAGCAACAACATCCTCAACAAGACCGGCCACCACCaagccaacaacaacaacaaccccgACTTCGGCAACCACAAGAGACTGGACTACAACCACctgaaccagaaccagaaccagcaTCAGCTGTCCGATTTCAAGCCGGGTGTCAATCAGGACACGTTCGGGCCGCCGCAGCAGATCGGTGACCTTCAGCAAGAGCggaaaaagcagcagcagcagcagcaggctgaTTTCGGCAACAAACAGCACCCTCCCCCgccacctcctcctccaccaccgcagcagcagcagcagcagtaccCGCCCCTGAACCGTGCGCTGCAGGGACCGCCCGAATCCGACCCGGGTGCCGAGCCGAACCCCGTCCACATCCACCCCGGAGCGGACGACACTGCGGCTGCGGAAGCCAATGCGGTGGCCGCTGCGTCGCCGTCGCCCTCTTCCGTGAATCCCAACAAGGTTAGGCTCCAGATGGACTCCCCCAACACCCACCTGCTCAACAACGGCAATGGCAGCAACCCCGGGAACATGCTGCCAGGAGGGCTCGGTGCCGGATTCACGAACCTCCAGAACCAAGAGCTGCCGAACCCCCAGCAGAACCCGGGGGGCTCCGCGTCCCCGTCTTTGCCCGGGTTCGGGACCCCCTGGTCGGTGCAGACTAGCTCCCCCCCACCGCCAGTGACCAACTGTAGCAACCCAAGTCATGCCAACCCCATGAATCAGATTCCCAACACCGACCCCGACAACAGTTTCTACCCCGGGATCCCTTCCTCCATCAACCCGGCCTTTTTCCAGAGTTTCTCGCCGGTGTCGGCTAATCCCTGCGCTGGGATTAACGTGCCGGGCTTCAACAGCCCTTTCTCCCCCCAGATTAATGTACCTCAACAGCAGCAGAACAGGAGGTCCCCGGTCAGCCCCCAGTTGCACCACCAACACCAGGGCGCATTTCTACAACAGAGGAACAACTACAACCACCACCAGCCCATCATGAAGCAGTCCCCCTGGAGCAGCCATCAGGGCAGCGGCTGGAGCTCTGGAGGGATGTCCTGGGGGGGCATCCACGGCCGAGACCACCGCAGGCCTGGCGGGATGGGGATCCCAGGCACCATGAACCAGATCTCGCCCATGAAGAAGCCCTTCTCCAGCAATGTCATTGCACCTCCCAAGTTCCCCCGGTCCGCAGCCTCACTGACGCCGAAATCCTGGATCGAAGACAATGTGTTTCGCACagacagcaacagcaacacCCTCTTACCACTGCAGGATCGTTCTAGAATGTATGACAGCTTGAACATGCACTCCCTGGAAAACTCACTTATTGATATAATGAGAGCTGAACACGATCCTTTGAAG

Function

GO: NA

KEGG:

id description
ko04510 Focal adhesion

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017565 True 1632 mRNA 0.61 3 11955414 11973684

Neighbor

gene id symbol gene type direction distance location
AMCG00017568 cpeb2 coding downstream 16881 11933251 ~ 11938533 (-)
AMCG00017567 LOC108240206 coding downstream 48020 11904838 ~ 11907394 (-)
AMCG00017574 NA coding downstream 103800 11843481 ~ 11851614 (-)
AMCG00017573 NA coding downstream 144758 11802643 ~ 11810656 (-)
AMCG00017564 ndnf coding downstream 159342 11785640 ~ 11796072 (-)
AMCG00017579 bod1l1 coding upstream 118786 12092470 ~ 12097269 (-)
AMCG00017587 drd5 coding upstream 690847 12664531 ~ 12665835 (-)
AMCG00017589 otop1,LOC106583410 coding upstream 697424 12671108 ~ 12677683 (-)
AMCG00017591 NA coding upstream 708742 12682426 ~ 12688515 (-)
AMCG00017588 NA coding upstream 730774 12704458 ~ 12710164 (-)
G91467 NA non-coding downstream 121516 11831433 ~ 11833898 (-)
G91466 NA non-coding downstream 125721 11828008 ~ 11829693 (-)
G91381 NA non-coding downstream 557683 11397520 ~ 11397731 (-)
G91371 NA non-coding downstream 664180 11290328 ~ 11291234 (-)
G91362 NA non-coding downstream 667251 11287855 ~ 11288163 (-)
G91539 NA non-coding upstream 367758 12341442 ~ 12341735 (-)
G91553 NA non-coding upstream 522607 12496291 ~ 12499947 (-)
G91556 wdr1,LOC107717326,LOC106583413 non-coding upstream 532943 12506627 ~ 12509143 (-)
G91562 wdr1,LOC106565198 non-coding upstream 543396 12517080 ~ 12521214 (-)
G91576 NA non-coding upstream 682385 12656069 ~ 12656333 (-)
AMCG00017569 NA other downstream 54814 11877360 ~ 11900600 (-)
AMCG00017563 NA other downstream 448594 11504024 ~ 11506820 (-)
AMCG00017556 NA other downstream 1458310 10361300 ~ 10497104 (-)
G91119 NA other downstream 3199507 8755288 ~ 8755907 (-)
AMCG00017531 NA other downstream 3206671 8732760 ~ 8748743 (-)
AMCG00017582 NA other upstream 334097 12307781 ~ 12322370 (-)
AMCG00017631 NA other upstream 2459474 14433158 ~ 14484818 (-)
AMCG00017638 scoc,LOC103463814,LOC103132857 other upstream 2786384 14760068 ~ 14764832 (-)
G92124 LOC101154678 other upstream 3893263 15866947 ~ 15867647 (-)
G92129 NA other upstream 4056718 16030402 ~ 16030905 (-)

Expression


Co-expression Network