AMCG00017566 (rbpj,LOC106577485)


Basic Information

Item Value
gene id AMCG00017566
gene name rbpj,LOC106577485
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 11414328 ~ 11423945 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017566
agagaAGCAATGCGAAATTACCTAAAGGAGCGAGGTGATCAAACTGTACTAATTCTACATGCAAAAGTTGCACAGAAATCTTACGGAAAtgaaaaaagGTTTTTCTGCCCCCCACCTTGTGTTTACTTAATGGGAAGTGggtggaagaaaaagaaagaacaaatggAGCGAGATGGCTGCTCTGAGCAGGAATCGCAGCCATGTGCATTCATTGGAATTGGGAACAGTGACCAAGAAATGCAGCAGTTGAATTTGGAAGGAAAGAATTATTGCACAGCCAAAACTTTGTACATATCTGACTCCGACAAGAGAAAGCACTTCATGTTgtctgtaaaaatgttttatggtaATAGCGATGACATCGGTGTATTCCTCAGTAAACGGATTAAAGTCATCTCCAAACCTTCCAAAAAGAAACAGTCCTTGAAAAATGCAGACTTGTGTATTGCATCAGGGACGAAAGTGGCACTCTTCAATCGACTTCGCTCTCAGACTGTGAGTACGAGGTATTTGCACGTAGAAGGAGGGAACTTCCATGCAAGTTCACAGCAGTGGGGAGCCTTCTACATACATCTctTGGACGATGAAGAGTCAGAAGGTGAAGAATTCACAGTACGAGACGGCTACATTCATTACGGCCAGACTGTAAAACTTGTGTGTTCAGTGACTGGCATGGCACTCCCCAGACTgATAATTCGGAAAGTGGATAAACAAACAGCATTGCTAGACGCGGATGACCCAGTATCGCAGCTCCATAAGTGCGCTTTTTATTTGAAGGATACAGAAAGAATGTATCTGTGCCTTTCTCAGGAGAGAATAATCCAATTTCAAGCCACTCCATGCCCAAAAGAAccaaacaaagaaatgatcaatgACGGAGCCTCATGGACAATCATCAGCACAGACAAGGCAGAATATACCTTCTATGAGGGGATGGGGCCTGTCCATGCTCCAGTTACTCCAGTGCCTGTGGTGGAAAGCTTACAGtTGAATGGTGGTGGTGATGTAGCGATGTTGGAACTCACTGGACAGAATTTCACTCCTAATCTTCGAGTTTGGTTTGGGGATGTGGAGGCTGAAACTAtgtacagGTGTGCAGAGAGCATGCTCTGTGTTGTTCCAGATATTTCTGCATTCCGCGAGGGATGGAGGTGGGTCCGCCAGCCAGTCCAGGTCCCGGTCACTTTGGTCCGTAATGATGGGATTATTTACTCCACCAGCCTTACTTTCACATACACACCAGAGCCAGGGCCCAGACCACATTGCAATGCTGCCGGGGCCATCCTCCGGGCAAACTCGAGTCTGATGGCGTCTGGTGAATCCAACACAAACAGCGAGGGAAGTTACACAAGCGTCACCACAAATTCTACCAATGTCACGTCAGCAGCAGCAACGGTAGTATCTTAACCTACAAACTGTCACAAAAGACTTCAAACTGACTATTCAAGtgctgcataaaaataaaaataaagaagaagaaaggaaaaactttAATCTTCGGCACCCTTTTGTGGTTTCATAGGGACACTCCTGTTAGATCTGAGGGCATATATGGTTTGTTTGGAGCCAAGATCAACAACAGGATCAATAAAGAAACCGCAACAATGATACATCAGCCATGtataaaactattattaaagaaaaatctatttttcgctttttcttttgttttttgttttttatttttgtttttattttgtttttgttttttgtttttttgtaaagggGCAAGATGTATTAATGTGGGTGGGACTGAAGGTTAAGAAAAGTAGAAGAAAGA

Function

symbol description
rbpj Enables DNA-binding transcription activator activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and RNA polymerase II-specific DNA-binding transcription factor binding activity. Involved in negative regulation of transcription by RNA polymerase II; positive regulation of transcription from RNA polymerase II promoter in response to hypoxia; and positive regulation of transcription of Notch receptor target. Located in cytoplasm; nucleolus; and nucleoplasm. Part of MAML1-RBP-Jkappa- ICN1 complex and transcription repressor complex. Implicated in Adams-Oliver syndrome and dilated cardiomyopathy.

NR:

description
PREDICTED: recombining binding protein suppressor of hairless isoform X2

GO: NA

KEGG:

id description
K06053 RBPSUH, RBPJK; recombining binding protein suppressor of hairless

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017566 True 1780 mRNA 0.43 9 11414328 11423945

Neighbor

gene id symbol gene type direction distance location
AMCG00017572 LOC108228807 coding downstream 26916 11356805 ~ 11387412 (-)
AMCG00017557 stim2 coding downstream 98528 11293608 ~ 11315800 (-)
AMCG00017558 NA coding downstream 464619 10948110 ~ 10949709 (-)
AMCG00017559 NA coding downstream 466323 10947746 ~ 10948005 (-)
AMCG00017555 LOC106608544 coding downstream 918178 10487297 ~ 10496150 (-)
AMCG00017571 NA coding upstream 107165 11531110 ~ 11536385 (-)
AMCG00017570 prdm5,LOC106560247 coding upstream 318539 11742484 ~ 11770097 (-)
AMCG00017564 ndnf coding upstream 361695 11785640 ~ 11796072 (-)
AMCG00017573 NA coding upstream 378698 11802643 ~ 11810656 (-)
AMCG00017574 NA coding upstream 419536 11843481 ~ 11851614 (-)
G91381 NA non-coding downstream 16597 11397520 ~ 11397731 (-)
G91371 NA non-coding downstream 123094 11290328 ~ 11291234 (-)
G91362 NA non-coding downstream 126165 11287855 ~ 11288163 (-)
G91359 NA non-coding downstream 145733 11268106 ~ 11268595 (-)
G91355 NA non-coding downstream 262630 11151378 ~ 11151698 (-)
G91466 NA non-coding upstream 404063 11828008 ~ 11829693 (-)
G91467 NA non-coding upstream 407488 11831433 ~ 11833898 (-)
G91539 NA non-coding upstream 917497 12341442 ~ 12341735 (-)
G91553 NA non-coding upstream 1072346 12496291 ~ 12499947 (-)
G91556 wdr1,LOC107717326,LOC106583413 non-coding upstream 1082682 12506627 ~ 12509143 (-)
AMCG00017556 NA other downstream 917224 10361300 ~ 10497104 (-)
G91119 NA other downstream 2658421 8755288 ~ 8755907 (-)
AMCG00017531 NA other downstream 2665585 8732760 ~ 8748743 (-)
AMCG00017520 NA other downstream 2899373 8473490 ~ 8514955 (-)
G90939 LOC105903575 other downstream 3417733 7992137 ~ 7996595 (-)
AMCG00017563 NA other upstream 80079 11504024 ~ 11506820 (-)
AMCG00017569 NA other upstream 453415 11877360 ~ 11900600 (-)
AMCG00017582 NA other upstream 883836 12307781 ~ 12322370 (-)
AMCG00017631 NA other upstream 3009213 14433158 ~ 14484818 (-)
AMCG00017638 scoc,LOC103463814,LOC103132857 other upstream 3336123 14760068 ~ 14764832 (-)

Expression


Co-expression Network