AMCG00017568 (cpeb2)


Basic Information

Item Value
gene id AMCG00017568
gene name cpeb2
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 11933251 ~ 11938533 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017568
CGTTCCTCTCTGTTCCCCATCGATGACGGCCTCCTGGATGACGGACACAGTGATCAGGTTGTCCCCGGGGTCCTCAACTCGCCCAACTGCTACTCCCACCAGAATGGCGAGCGCATCGAGCGTTTCTCCCGCAAGGTGTTTGTCGGTGGGCTGCCCCCGGATATTGATGAAgATGAAATCACTACAAGCTTTCGTCGCTTTGGACATCTGGTTGTGGATTGGCCTCACAAGGCAGAAAGCAAATCTTATTTTCCACCCAAAGGTTATGCATTCCTGCTGTTCCAAGAGGAAAGCTCAGTCCAGGCTTTGATTGACGCCTGCCTGGAGGAAGATGGGAAactttatctgtgtgtgtcaagTCCTACAATCAAGGACAAAccagTCCAGATCCGACCCTGGAATCTCAGCGACAGTGACTTTGTGATGGACGGCTCACAGCCACTAGACCCCCGGAAAACTATTTTTGTAGGAGGAGTTCCTCGTCCCCTAAGAGCAGTGGAGCTGGCTATGATAATGGATCGTCTCTACGGTGGCGTTTGCTATGCGGGAATCGATACTGACCCTGAGCTGAAGTACCCCAAAGGTGCAGGGCGGGTGGCCTTCTCTAATCAGCAGAGCTACATTGCAGCCATCAGCGCCCGCTTTGTCCAGCTCCAGCACGGAGATATTGATAAACGGGTGGAGGTGAAGCCATACGTGTTGGATGACCAGATGTGTGATGAATGCCAGGGAGCCCGCTGTGGGGGGAAGTTTGCCCCTTTCTTCTGTGCCAATGTCACCTGCCTGCAGTATTACTGTGAGTTTTGCTGGGCAAACATACACTCTCGTGCGGGGCGCGAGTTTCACAAACCATTAGTGAAGGAAGGGGCGGACCGTCCACGTCAGATTCACTTCCGCTGGAAC

Function

symbol description
cpeb2 Predicted to enable mRNA 3'-UTR binding activity and translation regulator activity. Predicted to act upstream of or within regulation of translation. Orthologous to human CPEB2 (cytoplasmic polyadenylation element binding protein 2).

NR:

description
PREDICTED: cytoplasmic polyadenylation element-binding protein 2 isoform X4

GO: NA

KEGG:

id description
K02602 CPEB, ORB; cytoplasmic polyadenylation element-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017568 True 903 mRNA 0.53 6 11933251 11938533

Neighbor

gene id symbol gene type direction distance location
AMCG00017567 LOC108240206 coding downstream 25857 11904838 ~ 11907394 (-)
AMCG00017574 NA coding downstream 81637 11843481 ~ 11851614 (-)
AMCG00017573 NA coding downstream 122595 11802643 ~ 11810656 (-)
AMCG00017564 ndnf coding downstream 137179 11785640 ~ 11796072 (-)
AMCG00017570 prdm5,LOC106560247 coding downstream 163154 11742484 ~ 11770097 (-)
AMCG00017565 NA coding upstream 16881 11955414 ~ 11973684 (-)
AMCG00017579 bod1l1 coding upstream 153937 12092470 ~ 12097269 (-)
AMCG00017587 drd5 coding upstream 725998 12664531 ~ 12665835 (-)
AMCG00017589 otop1,LOC106583410 coding upstream 732575 12671108 ~ 12677683 (-)
AMCG00017591 NA coding upstream 743893 12682426 ~ 12688515 (-)
G91467 NA non-coding downstream 99353 11831433 ~ 11833898 (-)
G91466 NA non-coding downstream 103558 11828008 ~ 11829693 (-)
G91381 NA non-coding downstream 535520 11397520 ~ 11397731 (-)
G91371 NA non-coding downstream 642017 11290328 ~ 11291234 (-)
G91362 NA non-coding downstream 645088 11287855 ~ 11288163 (-)
G91539 NA non-coding upstream 402909 12341442 ~ 12341735 (-)
G91553 NA non-coding upstream 557758 12496291 ~ 12499947 (-)
G91556 wdr1,LOC107717326,LOC106583413 non-coding upstream 568094 12506627 ~ 12509143 (-)
G91562 wdr1,LOC106565198 non-coding upstream 578547 12517080 ~ 12521214 (-)
G91576 NA non-coding upstream 717536 12656069 ~ 12656333 (-)
AMCG00017569 NA other downstream 32651 11877360 ~ 11900600 (-)
AMCG00017563 NA other downstream 426431 11504024 ~ 11506820 (-)
AMCG00017556 NA other downstream 1436147 10361300 ~ 10497104 (-)
G91119 NA other downstream 3177344 8755288 ~ 8755907 (-)
AMCG00017531 NA other downstream 3184508 8732760 ~ 8748743 (-)
AMCG00017582 NA other upstream 369248 12307781 ~ 12322370 (-)
AMCG00017631 NA other upstream 2494625 14433158 ~ 14484818 (-)
AMCG00017638 scoc,LOC103463814,LOC103132857 other upstream 2821535 14760068 ~ 14764832 (-)
G92124 LOC101154678 other upstream 3928414 15866947 ~ 15867647 (-)
G92129 NA other upstream 4091869 16030402 ~ 16030905 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location