AMCG00017569


Basic Information

Item Value
gene id AMCG00017569
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 11877360 ~ 11900600 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017569
tgcGCAGGGACGACATACAGTGTGGTAACAGACATGCGTAGCGAAATTACTATTGTAAAGAAGTTACATGTGCTCTGTTTTTGTCACAGTATACTACTGTTAGACCATTAATTACAATACAGACTAATCCTCCGGTCATATTTAGTTTCTCGTAACCGCAGGGTATGAAGCCACTGTAATTACTTCTTCAGTAACTAATTTCTGACCTAACCTAcattacacacacgcacaggccTGCTAATCTCTCATCTAGCTAATTGGCAGTTGCTATTGTTTTTGCAGAAATGGGTGCATAGCCCAGCGCCAgctttttgtgctttttgttttttaacgcAAGGAAATGGCTTCTCCAAGTGATCTtcgggagaaaataaaaaaaaagaggagggCGCTTCAAGAGTCTTTGACAAAGACTAGAGATGATGCTGATATGCAGGCTCTCTTCACCCCAGAAATGGAAATCAATAAAGAAAACGAACAGTCCATTGTAGAGTCCAAAGCAGAAAGCATCCTGCAGCAAGAAGCCTCCTTAGAGTCTACAAGTCGACTGAAGAGCTTTCATGACAGAGAGCTTGTAACCAGCTCTGACAGAGAGGTAGATGGCGATGAATTCAAAAGGAGGGATGGTTCATCTCTTGTTGATTCAAGAGTCAGATTTCGAGACGCAGCAAGCAGAATCGAACAGAAACCTGagACAGAGACTGGCCACCCTTCAGCAGAGGAAGCTTTCAATTTCTTCACTTTCAACTTTGACCCTGAACCTCAGGAGGCAGGAGAGAAAGGTAAAAAGAAGAGGATACTGAGGCGAGGTGAGGggcagggagaggaggaagaggctggggaggaggaagaggaggaggcagggatgactgaagaggaagagaaagaggagcAGGAATCTGAGGAAAAGGAAGAAGATGCCCCTCTTGTAAGAGAACAGGATGAAGACCTGTTTATAATTGATCAAACTGCTCAGGACTTCCTAGAAGTGAAAGCAGCAGAATATGAGGGCTATAACAGCCGGCTTCAGAAGGAGAGTGGGCTGCTGTTCACCCCAAGTCTTCTCACAGtacCGGCCTCTAATAAGGTTCCTGAGAACATGAAGCCTCGTTATCTAGAGGACGAAGGGCTGTATGTGGGGGAGAGGCCTCAGGTATCCCTAGCCAACCAGAACATCCTGGAGAATAGGATCCTGCAGAAGGAGGAGGGTAAGAAGTGGTTTGGCGACGATGGCAGGATCATAGCGTTGCCAAACCCTATTAAAGAATCTTTTACAAGACCTCCAGTGTTTTCCCTGGAGGAAGACCTAGATCCAGTGCTTGAAACTGTATACAGGAAGGCAGTAAAGTCCAAGAACGCCAGCCGCTACGCTCCCGGGACCGGGGAACCGCTGGGGGATTTTCAGCTGGACGTTGACGTCTCAGGCTTGATTTTCACCCACCACCCTCTATTCAGTCGGGAGCATGTTCTGTCTGCGAAACTGGCTCAAATGTACGACCAGCTCCTGACGAGACAACAGAAGAACATCACAGTCCTCCTCACCGACAAGctaCATGCTCTGAGGAATGCTGTACGTAATATCACAGAGCAACATGGTGGGCCGGCTCTTAATCCAGTGACACAACACAGGATAGCGGAGTATAAATCTGAAATAAGGCACACTCGGAAACTGCGAGATGCAGAGCAGGAAAAAGACCGCACCTTATTGAGAAACACTGTGAAGGTTTGGAAGGAAATGAAGTCCTTGCGAGAATTCCAGAGATACACTAACACACCTTACAAGCTCTACCTGAGAAgGGAGGAAGTGAGCCGGGTGTCAGATGAGCGACTGTATGAATCTGAAATCCAGGCAGAGATCAATGAGCGAAGGGAAGAGTTTCAGGAGGAGTATCAGAGGAAACTCTCAGAGTACAAAAGAGAGTTTGAGGAGTGGAAAGCCTGGAAAAAGAAGCAGAAGGTgagaaggaagaagaagaagaagcaacAGCTgccagaggaagaggaggaggaggagggcagtGAATTGGAGCTGGGAGAGGAGCCCTCGAAGCCAAGTCCTCCTGAGTGGCTGGACGAGGAGGCGCTGGAGGAGCAGGTCCGGGAGAAAGCAGCCAGCATCCGCAGGAAGCCCGGGGAACCCATCCTCATCCCAGAGCTGAGCACGGCCGGCAGCGTCACGGCCAGCGAGCAGTGTCCACGGGGGGAGATTTCAAGAAGGGAGGATGTCCTCAAACGCTCAGTCTTTGTGAAAGTTCTCTACAACAACAAGGAGGTCTCTCGGACGGACAGCCGGGTGCTGAACTCAGATTTCAGAGTCCACTTTGGACAGATCTTTAATCTGAAAATAGTCAACTGGCCAGAATGTGTGAAGCTGCAGGCATTAGACACAGTCGAGGGAGTTCAGCACACCGCTGTAAAGAGAGTGTTTGAGACGGTGGGATCCTCCAATACCTTACTGGCTGAGGTGTTTGTTCCTATCCCTGACACCATCGTGCTCACAGGCAGCAGCCCCTCCGAGGAGCTGGAGTTTAGCAGTGACCAGCGCGTCATGTTTGACCACGAGGGCGTCGGCAGTGATGTGCCCTTTTCATTTGAGGCTGACGGCAGTAACAAGCTGGTCTTGTTGACCTCTGGAAAACTGTCCTGTTGTGTGTCGTGGGCTGTGGCAGACAACAGCATTCCACTGGTGCCTCCTGTTGCCCAGCAGCATGGGGGGGTTCACAGTGCACTGAAGCAGTTGGATGCCATTGCATGTATCGGGGCTTCTGGATTAGGTGACATGAAGAAACTGGCAAAGTGGGCTGCTGAGTCCCGTATGGATCCAAACGACCCCAGTAACGCTGCACTCATGCAACTTCTAACTATTGCCAGCAGTGGGGAGGTGCAGGTGCCCGATTTCTTCCGCCTGGAGCAGCTTCAGGAGGAGTTTAACTTTGTGTCGGAGGAGGAGATCCAGAGATCAAAGCGGTTCAGACTGCTGCTGCTCAGGAACCAGGAGGTGCCAGAGTTCAGGAACTACAAGAGAGTCCCTGCGCTGGACAGAGAAATCTCAGACAAGGTGTTCCAGGAATATGAAAGGAGACTGCGTGCAACAGATATTGTGGATTCAAAGGAACATCTAGATGCCCACAGAGCGCTGGTAGCCAAATATTTACAAAAGctcAGGGAGTCTGTGATCAACAGATTTGTGATCGCAAAGCATAATTTCATCCTGTCCGACCTTGTTGTTGAGGAAGAGGTTCCCAGCATTGGGGTTTTGGGCATCAATCTGTTTAAACTGGCAGAACCCAAGCGACCTCTTAAGCCCAGaagaaaggagaggaagaaggtGACGGCACAGAACCTGTGTGATGGAGACATTAAACTCCTCATTAATGTTGTCAGGGCCTATGATATTCCCATACGAAAACCTCACACAAGTAAACCTTCAGTAGTGTCAAAATCTGCCAGGTCTTTCACTGAGGGCATTGCTGCCGGACAGTCATCACAGAGTCCAATGCAAAATAACGACTGGCCTCTGAACCAGGTTCTGATTCGGCCTTTTGTTGAGGTGACGTTCCAGCGCGCTGTGCGACAGACAACAACGGCGGATGGGCCGAATCCAAACTGGAACGAGGAACTGGACCTGCCCTTTAGGGCGCCCAATGGGGATTATAGCACAACTAGCTTGCAGTCAGTAAAGGATGATGTCTTCATCAACATCTTTGATGAGGTTGTATACGATGTAATAGAGGATGAGCAGGAGAGAGGCGGTGGAGTTCACACTCGAGTCGAGAGACACTGGCTGGGATCTGTGCGCATTCCCTTCACCACCATTTACCTCCAGTCACGGATCGACGGTACTTTCAAGATCAACACTCCGCCGGTGCTGCTGGGGTACAGCAAGGAGCGCAGCTTTTCCACTGAGGGCGGGTACGGAGCCGTGAGGTGTCTGAGTGAAGGCTCCTACATTACACTCTTCATCACAATCGAGCCCCAGCTGGTTCCCGGAGAGACCGTGCGGGAGAAGTTTGACACCCAGGAAGATGAGAAGCTCCTCCAGGCCGCAGAGAGATTTGAGAAGGAAGCTGCTGCCAAGTTCCCCGGGCGTCCGTGCCTCATGAATGTCATTGACATCAATGGAAAGACCGTATTCATCACTCGATACATCAGACCTCTGAACCCACCTCAGGAGCTGCTCGATGCCTTTCCTAACAGTCCACAGGAAGCCTCTGAGCTGGTGGCCCATTATGTTTCCCTCATACCATCCCTGCCTGATACTGTTTCATTTGCTGGCATCTGTGACCTGTGGAGTACCTGCGATcaATTCCTGGACCTGCTGGCTGGGGATGAGGAGGAACATGCTGTTTTGCTGTGCAATTATTTTCTGGCAATGGGCAAAAAAGCTTGGCTTATCATTGGCACTGCTATTCCCGAGGGGTCGACTGCTTATGTACTGACATTAGAACAAAGTCGATACGTCATCTGGAACCCCAGCAGTGGCCAGTTTTATGGCCAATATGATACCTTCTGCCCCCTGCAAAGCGTGGGATGCCTTGTAAATGCTGATAATGTGTGGTTTAATGTCCAGCAGTATGCCATCCCAATGAGGATGAGTTTTGACACCACTAAATCCAAATTCTGGAAACCATTCTTCTCGAGAAGTTTCTCCCACCCTGGCCTGTCCAGTATCCAGCCTGAGGAGCTCGTGTATCGCCGCACAGAtaaggcagcagcagcagaactACAGGATAGGATTGAGAAGATCCTGAAGGACAAGATCATGGAGTGGCGCCCCAGACACCCGACCCGCTGGAACCGGTACTGCACCTCCACGCTCAGGCACTTCCTGCCCAAGCTGGAGCTGAGCGGAGGGAAGGACGTGGGGGACGAGCACAGGATGGAGCTGCAGAGTCTGCTGGGGGATTACAGGATATCTGGGTTTCCGGTGCACCTACCCTTCTCTGAGATCGGCCCTGTGGTGGAAGCCGTGTACAGCACCGGAGTGCATAACGTCGAGGTGTCCAGCGTGGAGTTTGCGCTGGCTGTTCATGTCCATCCGTACCCGAACAACGTACTCTctgtgtgggtgtatgtgtCCTCTCTGATCCGTACCAGATAGATACAGAAgacttctctgtgtttttcaCCTTCAACTCCAGGCATTGAACCTCACATTCTTGCTTTTTCACCTGCATTATTTTGCGGTTAATCTATGTGAACTGTGGAGGAATACTCCCTCTCTTTTCAGCTGAATGACAGTTCGCATCTGTTGGGATGTTCTTCCTTGGGCAGAACTCTGTCATTAGACAATGTTATCATGCAAAAGAGTCTCCAACATTGGTCCtgcacacaaacatgaaaattaaatgcatatttttataaagcATCATATTacctgattaaaacaaaattcaaaagaGGACTATCAAATGGATAAATCATgagacttaaaataaaactaggAAATCAGAGAAGTTAGACATTAAAATCCTTAAATAGAAGGGTTACAAGACCTGTGTGCACAAGCTGGACTCTATAGATATTATACCGTGCCAAacaaatttcaaaacaaatacagaaaacaagttCCTGTctatacaaagaaaatatacacattttaggTTAATTGTagtgaacagaacagaacaaaacaatgcaaatgaatctgacttgttttatttgtaattg
>TU114103
TACTCCCTCTCTTTTCAGCTGAATGACAGTTCGCATCTGTTGGGATGTTCTTCCTTGGGCAGAACTCTGTCATTAGACAATGTTATCATGCAAAAGAGTCTCCAACATTGGTCCtgcacacaaacatgaaaattaaatgcatatttttataaagcATCATATTacctgattaaaacaaaattcaaaagaGGACTATCAAATGGATAAATCATgagacttaaaataaaactaggAAATCAGAGAAGTTAGACATTAAAATCCTTAAATAGAAGGGTTACAAGACCTGTGTGCACAAGCTGGACTCTATAGATATTATACCGTGCCAAacaaatttcaaacagaacagaacaaaacaatgcaaatgaatctgacttgttttatttgtaattgtaatttaagaAACCAATGATCCATAAATCAGCACTGATAGTAGGGAGCCTCCGCCACTACTCTGGAGTCCATTAACAGTCTCTGTATAAGAACCTATTGTTGTATATTAGTTTTTGTAGGTTCAGCAAAGTAATTGAGAGTCAAGATGCATGTCTGGGTCTTTCAAAAGGCCATATTCTTACAGAAATGTAATCACTGCAGCCCAAACTATAAACATGTTGGGATTTATAATCACACTGTTTTTATAACCCTTTAGCAGTAGCCAGTTACTTACAATTCAATCATGAACTTTGAAAGATCATGAGAATTTGTTTGACTAAATTCTATTTTAAGGGAGAATCCATGTTTGGGCAAGTAAAAATCTAATTCAGAAAACAACATTAGATCCCCATGGAGCAGCTTAGACATGAAGAAAAAAGCTATAGATCTACAAATGACCGAGTCCTGAGTCCTGTAACAACTTGCTCAGATAATCCAAAATTAGCTCAGTGTTGCAATGATCAAATCAAGGTCACACCAGCAAGGAGAAAAGAGTTCCTAGAAGTCATGAAATAACTAGCTCCCCAATCTTTGCTATgtctaaaacacattttatttcagaaaagccTTAATATTTCCTTATACTGATCAGAATCAAGTATTTCCccacaaatataattatttacatttaattcaaatgtgaaGCATGGCTGTTCAACAGTTTTGTCTTCATCTCTGTGCCCAAGAATGGATTTTATTctataataattcaaattaaatatctcCCTATAAGTGATTCTAGTTCATTTCTTCCAGTTCGGACTCTCCCAAAAGCATGAATTCAAATGAAGcgagaaaaaaatacatctaccTTGAACTTTACTATTGAtgcagataaaataaacaaacagcaatGATAAACAATTTCTCAGATGCATCTCTTATAATACAGCTGCAAAGGCAAAAATAGGAGAACCTGTATCCCAAGACAAACCCTTTCCTTTTCTCAATGTACAACATTTAGAAGTGAAAGAAATCACATTGAATGGTATTCCTAGTGTAAAGTGCATTATGGAAGCATATACAGCTACAGAAGTATTACAAGAGGGAGGGCAGGGTGGGGATCACTCCCCAGAACGGCAGCAGGCTCTGAAACCACACTGCAGATTCTGACATCCGCTGGCAGTGTCAGCATGGGGACCTGGGAAGAGACAAAGGGATATTGCAGTTACAATCCGATTTTGTGTGCAGTAATGGACCCTGACAGACATACACATTAGTTCACAGCTGTATATACTTGTCGTATATAATATACCTACCAgtgaacaaactgaaaaactaattttcttTAGACAAATATGAAAGAGGACATGATGGAACTCAAATATTGGTGACCAAGTTCCAGACAAAGGAATGGAACAGACAAACACCCAAGGTTggcaaatataaaaaacacaaagccagAAGCCCAGTATATTCCAAtggaacacaaacactgtgatGGTCAGTGATTACAAAGGTGTAGTGATGAGGAAATCCAG

Function

GO: NA

KEGG:

id description
K19352 CC2D2A; coiled-coil and C2 domain-containing protein 2A

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017569 True 5670 mRNA 0.49 37 11878880 11900600
TU114103 False 1910 lncRNA 0.36 2 11877360 11879337

Neighbor

gene id symbol gene type direction distance location
AMCG00017574 NA coding downstream 25746 11843481 ~ 11851614 (-)
AMCG00017573 NA coding downstream 66704 11802643 ~ 11810656 (-)
AMCG00017564 ndnf coding downstream 81288 11785640 ~ 11796072 (-)
AMCG00017570 prdm5,LOC106560247 coding downstream 107263 11742484 ~ 11770097 (-)
AMCG00017571 NA coding downstream 340975 11531110 ~ 11536385 (-)
AMCG00017567 LOC108240206 coding upstream 4238 11904838 ~ 11907394 (-)
AMCG00017568 cpeb2 coding upstream 32651 11933251 ~ 11938533 (-)
AMCG00017565 NA coding upstream 54814 11955414 ~ 11973684 (-)
AMCG00017579 bod1l1 coding upstream 191870 12092470 ~ 12097269 (-)
AMCG00017587 drd5 coding upstream 763931 12664531 ~ 12665835 (-)
G91467 NA non-coding downstream 43462 11831433 ~ 11833898 (-)
G91466 NA non-coding downstream 47667 11828008 ~ 11829693 (-)
G91381 NA non-coding downstream 479629 11397520 ~ 11397731 (-)
G91371 NA non-coding downstream 586126 11290328 ~ 11291234 (-)
G91362 NA non-coding downstream 589197 11287855 ~ 11288163 (-)
G91539 NA non-coding upstream 440842 12341442 ~ 12341735 (-)
G91553 NA non-coding upstream 595691 12496291 ~ 12499947 (-)
G91556 wdr1,LOC107717326,LOC106583413 non-coding upstream 606027 12506627 ~ 12509143 (-)
G91562 wdr1,LOC106565198 non-coding upstream 616480 12517080 ~ 12521214 (-)
G91576 NA non-coding upstream 755469 12656069 ~ 12656333 (-)
AMCG00017563 NA other downstream 370540 11504024 ~ 11506820 (-)
AMCG00017556 NA other downstream 1380256 10361300 ~ 10497104 (-)
G91119 NA other downstream 3121453 8755288 ~ 8755907 (-)
AMCG00017531 NA other downstream 3128617 8732760 ~ 8748743 (-)
AMCG00017520 NA other downstream 3362405 8473490 ~ 8514955 (-)
AMCG00017582 NA other upstream 407181 12307781 ~ 12322370 (-)
AMCG00017631 NA other upstream 2532558 14433158 ~ 14484818 (-)
AMCG00017638 scoc,LOC103463814,LOC103132857 other upstream 2859468 14760068 ~ 14764832 (-)
G92124 LOC101154678 other upstream 3966347 15866947 ~ 15867647 (-)
G92129 NA other upstream 4129802 16030402 ~ 16030905 (-)

Expression


Co-expression Network