AMCG00017570 (prdm5,LOC106560247)


Basic Information

Item Value
gene id AMCG00017570
gene name prdm5,LOC106560247
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 11742484 ~ 11770097 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017570
atgcttGGTATGTACGTGCCAGACAGATTTTTCCTGAAGTCTTCCAAAGTCCAAGATGGGATCGGTCTGTACACCGCAAGAAGAGTGAaaaagGGGGAGAAATTTGGCCCTTTTGCAGGTGAGAAGAAAATGCCCAACGAGCTGGATGAAAGCACTGATCCCAGATTAATGTGGGAGgttCGTGGGAATAAAGGAGACGTGCTCTATGTTCTGGATGCTAGTAATCCACGGCATGCTAACTGGCTGCGCTTTGTCCATCAGGCGCCATCACAGGAGCAAAAAAATCTGGCTGCTATCCAGGATGGAGAAAATATATTCTACTTGGCTGTAGATGACattgacacagacacagagcttctgattggttacttggacagtgatatggaagaagaggaggaggaggaggaaccCGTGAAAGACGACGACGAGAACAGCAAGGAGGCAAAGCATCTTGACTTGGTGAGGAAAGAGGACCACCCCTGCCCCCTCTGTGAGAACAGCTTCCCCAGCCAGGAGATTCTCGCCGCCCACCTGCAGACCCTTCACCAGAAGCCCAGCGAAGACAAAGAATTCAAGTGCAGGAACTGTGGGAAGAAGTTTCCGGTTAAACAGGCTTTACAGAGACATGTTCTTCATTGCACAGAAAATGTCAGTCCAGGAGACACCTCGAGAACACACCAGTGCTCCCTGTGCAGTAGCACCTTCAGCTCTGAGTCAAGTTTCGAGCAACACAAGGATGCGTGTAAAGGTGACGCCAGGTTTATTTGTAAAGCAGAAAGCTGTGGAAAGAGATTCAAGAGTAAAGATGCCTTGAAGAAACATAAAGGAAATGTTCATACAgGAAACGCTCGCAAGAAGCTGATGTGCTCCATTTGCAATAAGAAGTGTTCTTCAGCTGGGAACCTGCAGGAGCATCGAAAGGTTCATGAGGTCTTTGACTGCCCAGCATGTgacaaaaagtttatttcaactAACCAGCTCAAACGGCACATGATTACTCATTCAGAGAAACGCCCCTACACCTGTGAGGTCTGCAGTAGATCCTTCAAACGCCTTGACCAAGTGACAGCACACAAAATCATCCACAGTGAAGACAAACCCTACAAATGCAAGCTCTGTGGAAAGGAATTTGCACACAGGAATGTGTATAAGAACCACAAGAAGACTCACTCCGAAGAGAGACCGTTCCAGTGCGAGGAATGCAAAGCCCTATTCAGGACACCATTCTCCTTGCAAAGACACCTGTTGATACATAATAGTGAAAGGACGTTCAAGTGTGATCACTGCGATGCAACGTTCAAAAGAAAAGACACTTTAAATGTTCACATCCAGGTTGTGCACGATGGCCACAAGAAGTACAAATGTGATCTGTGTGAAAAGGCTTTTGTGACTCCCTCCGTTTTGAAGAGCCATAAAAAGACCCACACtggtgaaaaagaaaagatttgcCCCTACTGTGGACAGAAGTTTGCAAGTAATGGGACCCTCAGAGTGCACATACGAAGCCATACA

Function

symbol description
prdm5 Predicted to enable DNA-binding transcription factor activity and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Acts upstream of or within embryonic cranial skeleton morphogenesis; regulation of Wnt signaling pathway; and regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in head; intestinal epithelium; nervous system; and pectoral fin. Human ortholog(s) of this gene implicated in brittle cornea syndrome 2. Orthologous to human PRDM5 (PR/SET domain 5).

NR:

description
PREDICTED: PR domain zinc finger protein 5

GO: NA

KEGG:

id description
K22534 PRDM5; PR domain zinc finger protein 5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017570 True 1512 mRNA 0.47 13 11742484 11770097

Neighbor

gene id symbol gene type direction distance location
AMCG00017571 NA coding downstream 206099 11531110 ~ 11536385 (-)
AMCG00017566 rbpj,LOC106577485 coding downstream 318539 11414328 ~ 11423945 (-)
AMCG00017572 LOC108228807 coding downstream 355072 11356805 ~ 11387412 (-)
AMCG00017557 stim2 coding downstream 426684 11293608 ~ 11315800 (-)
AMCG00017558 NA coding downstream 792775 10948110 ~ 10949709 (-)
AMCG00017564 ndnf coding upstream 15543 11785640 ~ 11796072 (-)
AMCG00017573 NA coding upstream 32546 11802643 ~ 11810656 (-)
AMCG00017574 NA coding upstream 73384 11843481 ~ 11851614 (-)
AMCG00017567 LOC108240206 coding upstream 134741 11904838 ~ 11907394 (-)
AMCG00017568 cpeb2 coding upstream 163154 11933251 ~ 11938533 (-)
G91381 NA non-coding downstream 344753 11397520 ~ 11397731 (-)
G91371 NA non-coding downstream 451250 11290328 ~ 11291234 (-)
G91362 NA non-coding downstream 454321 11287855 ~ 11288163 (-)
G91359 NA non-coding downstream 473889 11268106 ~ 11268595 (-)
G91355 NA non-coding downstream 590786 11151378 ~ 11151698 (-)
G91466 NA non-coding upstream 57911 11828008 ~ 11829693 (-)
G91467 NA non-coding upstream 61336 11831433 ~ 11833898 (-)
G91539 NA non-coding upstream 571345 12341442 ~ 12341735 (-)
G91553 NA non-coding upstream 726194 12496291 ~ 12499947 (-)
G91556 wdr1,LOC107717326,LOC106583413 non-coding upstream 736530 12506627 ~ 12509143 (-)
AMCG00017563 NA other downstream 235664 11504024 ~ 11506820 (-)
AMCG00017556 NA other downstream 1245380 10361300 ~ 10497104 (-)
G91119 NA other downstream 2986577 8755288 ~ 8755907 (-)
AMCG00017531 NA other downstream 2993741 8732760 ~ 8748743 (-)
AMCG00017520 NA other downstream 3227529 8473490 ~ 8514955 (-)
AMCG00017569 NA other upstream 107263 11877360 ~ 11900600 (-)
AMCG00017582 NA other upstream 537684 12307781 ~ 12322370 (-)
AMCG00017631 NA other upstream 2663061 14433158 ~ 14484818 (-)
AMCG00017638 scoc,LOC103463814,LOC103132857 other upstream 2989971 14760068 ~ 14764832 (-)
G92124 LOC101154678 other upstream 4096850 15866947 ~ 15867647 (-)

Expression


Co-expression Network