AMCG00017572 (LOC108228807)


Basic Information

Item Value
gene id AMCG00017572
gene name LOC108228807
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 11356805 ~ 11387412 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017572
ATGGATGAAGGAACAGAGTTGTCCATGACAATTGCTCAGGTTGTCCAGAAACTGAAGGGGTCACATTTACATTCCCAGCTAGAAAAACAGGCCAAAGAGTGCTTACACAGGCCAGACATTCAGCTTGAATGTCTTAAAGATGATGTACGCAATTTTCTTAGGAACTCAGGTTGGGAAAAAAAGCTGCAGAATGCTGTATATCGTGAGTTGCATGTGCTTCCTCCTCCCAGTCACCCAGCTGCACCCCCAGAGCATATTAAGGAACCACTGGCATACATGAGAAAGGCACAGGCGAGCTGGGAAAAGCGTATACTCAAAAGCTTGAACAGCATGTGCACAGAATTGGGTGTTCCTTTGGCTCGAAAGAGACCTGTAAATGAACAAAAGGAGCTATTAAGCAAGTGGAATGAAATGGGAACTGATGAGCCagATTTAAGCCATTTCAGACCTGTGTATGCTCCTAAAGATTTTCTAGAgGTACTGATCAGCCTCCGCAATCCAAACTATGATATCAGTGATCAAGCCAGCTCCAAAGCTCACTGGGGACTGATCCAAGTTCCACTAAATGTGAAAGACATCCCAGAGCTGAGGGAAGCCTTTTCAGAATTGGATCTGACGAGTGGACAGCTTGGGATTGATGATCACACCAGTatatgtttgaaaatgaaCATGTTCGCATTGGGAAAAAAGGATGTGAAGCTGACTGCCAGTAATGATGATTACTACTTTGTGTTTGAAGATTACTTATATCAGCTGGGAGTAGAAGAATATGCTGTAATTTATCCCCCAAATGTTGCCCCTCTGTGTTTCCTTTATAATGAGCCTTCCAAGCTATACAGTGTTTTCCGGGAGATGTATGTGCGCTATTTCTTTAGACTTCATTCcatttcttcatcttcttcGGGTATTGTGTCATTGTGTCTACATTTTGAAACTCTTCTTCAAACTCACCTCCCACAACTTTTCTACCACCTGCGTGAAATTGGAGCACAACCGTTGCGTATTGCTTTTAAGTGGATGGTACGAGCCTTTTCAGGATACTTAGCCACTGATCAACTTTTGCTCCTATGGGACAGAGTCCTTGGATATAACTCACTTGAAATTCTTGCAGTACTGGCAGCTGCTGTGTTTGCTTTCCGCGCAGAGAATCTGATGGAGGTGACATCACTGGCTGCAGCTGAA

Function

NR:

description
PREDICTED: TBC1 domain family member 19-like, partial

GO:

id name namespace
GO:0043085 positive regulation of catalytic activity biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017572 True 1182 mRNA 0.44 16 11356805 11387412

Neighbor

gene id symbol gene type direction distance location
AMCG00017557 stim2 coding downstream 41005 11293608 ~ 11315800 (-)
AMCG00017558 NA coding downstream 407096 10948110 ~ 10949709 (-)
AMCG00017559 NA coding downstream 408800 10947746 ~ 10948005 (-)
AMCG00017555 LOC106608544 coding downstream 860655 10487297 ~ 10496150 (-)
AMCG00017554 NA coding downstream 1809491 9495728 ~ 9547314 (-)
AMCG00017566 rbpj,LOC106577485 coding upstream 26916 11414328 ~ 11423945 (-)
AMCG00017571 NA coding upstream 143698 11531110 ~ 11536385 (-)
AMCG00017570 prdm5,LOC106560247 coding upstream 355072 11742484 ~ 11770097 (-)
AMCG00017564 ndnf coding upstream 398228 11785640 ~ 11796072 (-)
AMCG00017573 NA coding upstream 415231 11802643 ~ 11810656 (-)
G91371 NA non-coding downstream 65571 11290328 ~ 11291234 (-)
G91362 NA non-coding downstream 68642 11287855 ~ 11288163 (-)
G91359 NA non-coding downstream 88210 11268106 ~ 11268595 (-)
G91355 NA non-coding downstream 205107 11151378 ~ 11151698 (-)
G91354 NA non-coding downstream 288790 11067713 ~ 11068015 (-)
G91381 NA non-coding upstream 10108 11397520 ~ 11397731 (-)
G91466 NA non-coding upstream 440596 11828008 ~ 11829693 (-)
G91467 NA non-coding upstream 444021 11831433 ~ 11833898 (-)
G91539 NA non-coding upstream 954030 12341442 ~ 12341735 (-)
G91553 NA non-coding upstream 1108879 12496291 ~ 12499947 (-)
AMCG00017556 NA other downstream 859701 10361300 ~ 10497104 (-)
G91119 NA other downstream 2600898 8755288 ~ 8755907 (-)
AMCG00017531 NA other downstream 2608062 8732760 ~ 8748743 (-)
AMCG00017520 NA other downstream 2841850 8473490 ~ 8514955 (-)
G90939 LOC105903575 other downstream 3360210 7992137 ~ 7996595 (-)
AMCG00017563 NA other upstream 116612 11504024 ~ 11506820 (-)
AMCG00017569 NA other upstream 489948 11877360 ~ 11900600 (-)
AMCG00017582 NA other upstream 920369 12307781 ~ 12322370 (-)
AMCG00017631 NA other upstream 3045746 14433158 ~ 14484818 (-)
AMCG00017638 scoc,LOC103463814,LOC103132857 other upstream 3372656 14760068 ~ 14764832 (-)

Expression


Co-expression Network