Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00017574 |
| gene name | NA |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030131.1 |
| NCBI id | CM030131.1 |
| chromosome length | 33043351 |
| location | 11843481 ~ 11851614 (-) |
| genome version | AmiCal1_2021_bowfin_Genome |
| id | description |
|---|---|
| ko04744 | Phototransduction |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00017574 | True | 524 | mRNA | 0.42 | 5 | 11843481 | 11851614 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00017573 | NA | coding | downstream | 32825 | 11802643 ~ 11810656 (-) |
| AMCG00017564 | ndnf | coding | downstream | 47409 | 11785640 ~ 11796072 (-) |
| AMCG00017570 | prdm5,LOC106560247 | coding | downstream | 73384 | 11742484 ~ 11770097 (-) |
| AMCG00017571 | NA | coding | downstream | 307096 | 11531110 ~ 11536385 (-) |
| AMCG00017566 | rbpj,LOC106577485 | coding | downstream | 419536 | 11414328 ~ 11423945 (-) |
| AMCG00017567 | LOC108240206 | coding | upstream | 53224 | 11904838 ~ 11907394 (-) |
| AMCG00017568 | cpeb2 | coding | upstream | 81637 | 11933251 ~ 11938533 (-) |
| AMCG00017565 | NA | coding | upstream | 103800 | 11955414 ~ 11973684 (-) |
| AMCG00017579 | bod1l1 | coding | upstream | 240856 | 12092470 ~ 12097269 (-) |
| AMCG00017587 | drd5 | coding | upstream | 812917 | 12664531 ~ 12665835 (-) |
| G91467 | NA | non-coding | downstream | 9583 | 11831433 ~ 11833898 (-) |
| G91466 | NA | non-coding | downstream | 13788 | 11828008 ~ 11829693 (-) |
| G91381 | NA | non-coding | downstream | 445750 | 11397520 ~ 11397731 (-) |
| G91371 | NA | non-coding | downstream | 552247 | 11290328 ~ 11291234 (-) |
| G91362 | NA | non-coding | downstream | 555318 | 11287855 ~ 11288163 (-) |
| G91539 | NA | non-coding | upstream | 489828 | 12341442 ~ 12341735 (-) |
| G91553 | NA | non-coding | upstream | 644677 | 12496291 ~ 12499947 (-) |
| G91556 | wdr1,LOC107717326,LOC106583413 | non-coding | upstream | 655013 | 12506627 ~ 12509143 (-) |
| G91562 | wdr1,LOC106565198 | non-coding | upstream | 665466 | 12517080 ~ 12521214 (-) |
| G91576 | NA | non-coding | upstream | 804455 | 12656069 ~ 12656333 (-) |
| AMCG00017563 | NA | other | downstream | 336661 | 11504024 ~ 11506820 (-) |
| AMCG00017556 | NA | other | downstream | 1346377 | 10361300 ~ 10497104 (-) |
| G91119 | NA | other | downstream | 3087574 | 8755288 ~ 8755907 (-) |
| AMCG00017531 | NA | other | downstream | 3094738 | 8732760 ~ 8748743 (-) |
| AMCG00017520 | NA | other | downstream | 3328526 | 8473490 ~ 8514955 (-) |
| AMCG00017569 | NA | other | upstream | 25746 | 11877360 ~ 11900600 (-) |
| AMCG00017582 | NA | other | upstream | 456167 | 12307781 ~ 12322370 (-) |
| AMCG00017631 | NA | other | upstream | 2581544 | 14433158 ~ 14484818 (-) |
| AMCG00017638 | scoc,LOC103463814,LOC103132857 | other | upstream | 2908454 | 14760068 ~ 14764832 (-) |
| G92124 | LOC101154678 | other | upstream | 4015333 | 15866947 ~ 15867647 (-) |
