AMCG00017575


Basic Information

Item Value
gene id AMCG00017575
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 12098990 ~ 12118066 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017575
ATGGAGAATAAGACAGACACTGCTCTGACTGAGGAGAACAAAGAGCAGAAGCCCAGAGCCGGCAGACAGGCCTACATCCACAAGCCTTTCCTTTACTCCAGGTACTACAGCGATTCCGACGACGAAgcCAAAGACAAAGAAGAAAGGCTACTGAAAAGACAGCAGAACAGAGAGAAGTTAGAGGAGAAACGCAAACAGAAAGCATCACAGGTGGAGGAGCAAGatgaaaagaaaaggatttCTCCAAGCTTTGACACACCCGGCCCAAGTGGGAAAGAGGCACGGAAAGAACAGAAGGTCCTGGAGAAGAAAGTGGCTATCAGCAGGAAGCGCAAGCGTGACTCcagaaaaGAGGATGATGTTGGGAGTAatagcaaaagaaaaactgacCCTGGGGAGGAATCTAAGGAAACATTGAAGAAGGCTGATACACAGGAAACGGTGACTTCCTCAAAGGAGTTGAAAGCCAGCTCTTTGAAAGGTCAGCAGCTGAAGTCTGTCCGAAGACTCTCTGAGTCGGCTGTAACAGAAGAGAACAAGAATGAGCTTCGCAGGAAGAAGGCGAGCAGCTCTATTTCTGAGGAAACTACAGCTGGTGGAGGGGAGCCAAAAGACCACAAAAGACTGTCAGACAAGAGCAAGACGCACTCGTTCATCTTAGACCTTGAGCAGGGTTCTGAAGAACTGCTGAAACAGAGAACGGCAGGGAAATTTGAGAAGCACCCTAAAAAAGAATTGGGTGATACAGAAGAGTCGGGGAGAAAAAAAGAGGCCAAACATTCCAAAGAAAAAGTTGAAAAGGAACGCAGCCTCTCTGATGACAGAGTCAAGCACAAGCAAAAGAGTGACAAAGCACAGAAAGGAGCAGAGATCTCTGCAGAACATCACATTTTGGAAAGTAAAGGGCCAGAAAATGTGCTCAAGTCATCCGCAGATGATAAACTGGACAGAAAGAGCAAGAGTAAAGGAGAAAAGAAGAGCTCGGCTTCAGTAAGGGAGTCGAAGTTACTGATTGCAGAGTCGGCTTTGGAGGAGGGCTCATACAAAGATGGCACAAGGAAGGTTAAGGTTTCTGTAGCTGACACTCCAAAAATGGACAAGATGAAGAGTGAGAAGGCATTGACCAAAAGTGACTCCAAACAGCTGCTTTCTGTGGATTCCAGCTCCAAAGTGGAAAGCTCCTCCGAAGACAAGTCGGATATAGAACCTGGATCTGAGGGTGGCAGGAAGAAAGAGAAGCATACCAAAGACATCATCAAGAGGTCCAAGAGCTACTCTGATGACCGGCATATGGAGAAAGTGAAGTCCAAGAATGAGAACAGAGAAGCCAAGCCAAGTGAGAGGGAAAATGTGGTCTCTGACCGTAGAACAAAGCCAGATCAGACTCCACAGGAGACCATTAAATCTGAAAAGGCTGATGTGGAGGTTGAGCGTAGATCCAGGGATACAGATAATGTGGGTAAGGTCAGAGCTTCAGCAGAAGGCGATAGTGAGAGTGGCAGCAGAACAGCAGCCAGCACTCCGAGGGATACCACTCACAAAGTCAAAGTGGAAAAGTCTTtaacaaaatctaaatctagGGATGACTCCAAAGCTCAGTCTGTATCCAAAGCAGAAAGGAGATCTCTAAGTGCtgaacacaaaagcaaagtgaCAAAACCAAGTAGGTCTGATGTatcgaaagaaagaaaaagggaggGGAGTTTGAAGGATGACAAGAAAGGCTCAGAGGAAAAACTACAGGATAAAAGCACAGAGGAAGCACAAGAAAGCATGGATGTGAAGACGATTGCTGATAAAAAAGCAAGTATTAAAGATGCAGAAAAGAAGGGAGGTGAAACTGATATTGCACGCTCAACGCCTGATGAGGTCAATGCTTCAGAGAAGTCAGGCAGCACAAGTGAAGATGGTGGTAAATCATCACCTAAAGCTACAGAAAACCTCTCCCATCCCATTCATGAAAGTGTAGATATTGATCTAAAAAATGCAGAGGTCTCTACTGTCCTGGACAATCCGGTCTCTACTGTCCTGGACAATCCAGTCTCTACTGTCCTGGACAATCCTGAGACTCCTGTCATCTGCAGTTCCGAAACGGAAGACAAATCTGACGAGTCTATTTCCAAACGCGCAGATTTGATGGAAGATACCAGTGTGAAGTCGGAAGCAGTAGCTGCTGTTTCAGATGACACATTTGATGCTCTGAGTGACGTGACTCCTGAACCTGAACTTGAAGATGAGACCCAAATGCAGATTATTTCCCCTGAACAAGAGTCCAAGActgaagaaggagaaaaattAGAAGATCCGAAAACCACTAAACAGACTCCTCATGAACCAGAAATCGTGCCTTTGTGCCCAGATGAGCTTCAGGCTGGAGATGGCATTCCAGTGGACGCGGGTGTTATTGATACAGAGACCTTAAAACCTGAGGAAGATATTCCAGCTAGTGTGgtttcagaaacaaaagaaatatCTATGGATGTTGAATACAACCAAGACCATGCAGCCATCATCACGCAACAGCAGGAAGATGCTGATACAACCTGCAGAGAGGGAAGTATCCCAGCCACAGTTTGGACTGAGGAAAGTCCCATGCCCAGTGAGACCAGAGTTGAATTGGGTAGTATTACAACGCAGGAAACAAACATACCTCAAGAGATCTCTTTTCAAGAGGCAgatctgaaaatgaaagaagcTGCCTTGACTTTGCTTTCCATGGATTCGGAGATCACATCTAAGAGCTTAGCGACACCATTCTCTTTAGAAATAACATCTCCTATTGTACACAGTGATGGGCAGCTAACGGTCTTGCAGACTGAAAACCTAACAGTCTTGCAGACCGAAACCCTAAGTGATTTTGACAATGTAGACAAGTCAGAAAACATATTGGCAGATACAGGTCTGGAAGTAGAACGAGAATCAAACAATGCACCTTTGACTAGAGAAGCTGTCGTCAGAGAAGAGGATCATGGGGAAATGATAGAAGGGACATCAGCAGACTTGGACAAAACGTCAGAAGAGAAGACCGATCTCAAAGATGCAGACAAAACTGAAAGTGACCCACAAGAGAAGGCCTCACCTGTAGCAACTCCTGAACAGAAGCAGGATGAAACGGACATTGTTACCACAGAGGAGGGTAAGGAGGATCAAAAAGAAAGTACAAGTGATGCAATACCAGAAACAGAAGACAAGGACATTTCATCAGAAAAGAGAACTGAGGTTGACAACTCTGTGGATGTCCAGGAGAAAGAAACTGATGAGGGTCCATCAGCCAAAATTGAAgCCGGCACGTCCTCAAGCACGGATCTGACGGTGACAGAACCTGAGACCAAACCTGATGCAAAAGAATCAGATGAAAATACGGCTGAAATATCAGTAGCAGAAGGGATCACAGAAGCAGCTTCGGTTGTTAATACTGAAGGTGAAGGCAAAGCTGAATGTGGAGAAGATGAGGGAAGAGACGGCAGTaagGAAGATGTGGAAAAGGCAGGCGAAAGAAAGCCTAGACGTAGAGGAAGATGGGCCAAATCAGCAGTCAAGGAGACAAgtaaagaaaggaagaaagatgATGAAGAGAAGGAAGAATCGGAGATTgACTCGGAGTCTGGAAATAATGAGGAGACCCGAGACACCCCTCAGAAAGGCAGGTCCTCTCGCACTTCCAGCACTTCACTGGGAGAAACCTccAAGGGATCACAAGAGCAAGCTAAAGAGACTGCCTGTGCACAGAAATCAGAGGAGGAGGAAGCCGCTGAGACTTCCAGAGGGACTCGAAAAAGCAGACCATCCAAACTAGTGAAACAGACAAGTAAAACATCCAAGAAAGATGGAGATGAGGAGGAAAAACAGAATTCTGATCCATCCGAATCTGAGGACAAGGCTGAAGAAAGATCAACACGCAGAGGAAAGCAGACCAATCAGAAATCCTCTCTGGGGAAGGATGctaGTAAATCATCCAAGATTGAAAAGGAGAATAAAGAGCAGAATTCTGATCAGTCAGGGAATGAAGAAGAATCTGAGAACATAAAGGACACCAGAACTCGGAAGAGGAGATCATCCCAAACTACTGCAACTCCTCTGAGGGAAACtagaacttcTTCCCAAGAGGtggaggaagaaggagagaacTCGGAAGAGAAGCCAGAGAAGGTTGAGAAGACTCAAGTTCGCAGAGGAAGACGTTCTGCCCAAttgaaggaaactggcaaagGTACTCAGCAGAAAAAAGatgatgaagaaaaaacagaacacagtTCTGAGGAGAAAACGGATGAGAAAGATGATGAGAAAACTGAGCCAAAGAGACCCGGGCGTAGGGGAAGACCAATGAAACCCCAGACCTCAAACCTTCCACAATCAGATAAACAATCAAAGGACCAGAGTGAGGAGAAGGAAGGAGCGGAAAGCTCTGATGGAGATGCGAAAGATGAGGAAGAACCTGATAATGAGGAAAAAGGAGCTAAGAAGCGACGAGGCAAATGTCCATCAAAGCAGTCCAAAGACACACGCAAGTCTGCTGCGAAGAGAAAGAGGGCAGAAGAGTCTGAGGAGTCCGACGATgaGAGAGATGCTGAAGAGCAGAAACCTGCTGCAAAGAAGCAAGTGCTGAAACGCCCCAAAGATGACAGTTgCAGTCCATCTGATGATCAGGACGATGGGAAGGGAGATGAAAGCTCCACTGATATGAAAGCTGAAAATgatgaagacaaaggaaaaccACAGGAGAAGAAAACAGTCCGCAGAGGACGGACCCCCAAAGCAACTGCAGCCACGGTGGAGGAATCGGAAAAGCAAGACACGGGCAAGAAAGATAAAAAGCCTGATGAGACAGAAGAACAGGAAGATGTGGCGGATGAAGaggtggaagaggaggaggaggacgacgaTGACGATGAAGAGGAAACTCAAAGGAGAGCTACAACCCGGTCTGCGTCGCGGCTCGAGGCTGAGAGaaACAAGCCCAGTAAGCCTTCCACACGTGCACTCAGTAAACTGAGCAGTCCAGAGCCAACAGCTACAACTCGCAGCTCGAGGCTCCAGCCTTCTCCGGCCGCAAAACCAGGGCGCAAGCGGGAGGCGAGCCCCCTGGCAGTCCGCACACGAGGGGGGCAGAAAACGGAGGAGCCGGCCGCCAAGAGGACAAAACGATGAACTGAAGACTGAGCCGTGTCCtcgggcagcagtgtgtgtttcaTGTCTACATCTGcgtagttttaatttttaaactatacatatgtaaatacacaatGTTGCAAAGGTGAAGGCGTTTACAGAGTAAAATGGACGTCGTATTGTTTTCCCTGAAGATCTCGATGCTAATGTGACAGAGTATCGGGCACTTTTATCGCTGGGTCCCCCATTTACCAGGTTGATTTGTGTTAATTCAATGAAAGAGGTCGGCACACTAAACAACAATGAGCTACAGGCCCACAAAACAGCCGCcctcagaaaaagaaaaaggtactGCACACTTGGTTAACCTCCATTGCATGAATATACAGCTTTTGAAGGCACTGTTTGTATGAAATTTTAGCAATGGTGAAAATCTCTTGACACACTTGGGTAGCCAGGCTCAGGGCAAAATTTCTTAAGCACcacatacttcataaatatgtaaaaagaaaaaagtttaaagTAAGCTTGTGCcaacttaatattttaattaatttagtgttCTATACGGGAATGAAGCTCTTTCATTATACAGTTTTGACACCCTTGTACATTAGTCTAGAAATTGCTTTGAACTGTATTTGTTCCACCACGTACAAATCCGTCTTACAAAATTTAATGTAAAGCTATTCATTCTGTGAATGTGAAGACACCACGGCATgtacttttttatgtttatattctttattatatattgcTCTCGTTGTACTCTTATTCtagtcaaaatatatattttgaagtcTTTACTGAAAACTTTGATGTTGtaaaccatgaaaaacaaccTCCTTTGTAGTTCCTTTGCATTGATATTGATATATCTGTAAGCATCTTCATCCTCTTCAGTCAGTAtttgcaaacagaaaaaaaagacattaaaatgctgttttttaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017575 True 6063 mRNA 0.45 34 12098990 12118066

Neighbor

gene id symbol gene type direction distance location
AMCG00017578 NA coding upstream 69032 12024533 ~ 12029958 (+)
AMCG00017577 NA coding upstream 74485 12024256 ~ 12024505 (+)
AMCG00017562 fbxl5,LOC106674637 coding upstream 219517 11867165 ~ 11879473 (+)
AMCG00017561 NA coding upstream 573976 11507876 ~ 11525014 (+)
AMCG00017560 NA coding upstream 696319 11390189 ~ 11402671 (+)
AMCG00017576 LOC106589762 coding downstream 11597 12129663 ~ 12130950 (+)
AMCG00017581 rab28,LOC106600633 coding downstream 30203 12148269 ~ 12158241 (+)
AMCG00017580 rab28,LOC107717319 coding downstream 55778 12173844 ~ 12178118 (+)
AMCG00017585 NA coding downstream 275214 12393280 ~ 12397753 (+)
AMCG00017583 NA coding downstream 354882 12472948 ~ 12489169 (+)
G91490 NA non-coding upstream 123378 11975409 ~ 11975612 (+)
G91481 NA non-coding upstream 162651 11936101 ~ 11936339 (+)
G91480 LOC107549164,LOC106560248,LOC106584219 non-coding upstream 163029 11935627 ~ 11935961 (+)
G91387 NA non-coding upstream 682250 11416521 ~ 11416740 (+)
G91386 LOC106577485 non-coding upstream 683888 11408294 ~ 11415102 (+)
G91545 NA non-coding downstream 317678 12435744 ~ 12435984 (+)
G91549 NA non-coding downstream 372017 12490083 ~ 12490296 (+)
G91597 NA non-coding downstream 589244 12707310 ~ 12710716 (+)
G91619 NA non-coding downstream 747121 12865187 ~ 12891356 (+)
G91649 NA non-coding downstream 941790 13059856 ~ 13060646 (+)
G91452 cc2d2a other upstream 218491 11879614 ~ 11880499 (+)
G91281 LOC103376870 other upstream 2515710 9519773 ~ 9583280 (+)
AMCG00017527 tkfc,LOC107731922,LOC107095500 other upstream 3334087 8751713 ~ 8764903 (+)
AMCG00017526 paics,LOC107555752 other upstream 3398236 8687697 ~ 8700754 (+)
G90955 NA other upstream 3966136 8132368 ~ 8132854 (+)
AMCG00017600 NA other downstream 1078829 13196895 ~ 13259760 (+)
AMCG00017615 sorcs2,LOC106577493,LOC107590992,LOC107656200,LOC107722411 other downstream 1663200 13781266 ~ 13830819 (+)
AMCG00017620 htra3,LOC106577909 other downstream 1907570 14025636 ~ 14039063 (+)
G92046 NA other downstream 2959259 15077325 ~ 15084278 (+)
AMCG00017651 NA other downstream 2970066 15088132 ~ 15090829 (+)

Expression


Co-expression Network