AMCG00017576 (LOC106589762)


Basic Information

Item Value
gene id AMCG00017576
gene name LOC106589762
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 12129663 ~ 12130950 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017576
ATGGCCGTTCGCAACACCTTAACgcctttctccatccaagccattttaaacaaaaaagacgAAAGCAGACATGTGCCAGAGCTGGACGTCTGCTTTCCCCAGACAACCTGTTGGAAAATATTCGGGGATGTGGAGAACGCATCTGGAGATTGCTCGTCTCCTTGCAAAAGTGAAGGGGAGGCTTGCTTGGCCAGCGACCAAAAGAGTTACGACTCGGATTCGGGTCTCAGTGAGGAGAATGACAGCAAGGCCCTTCCCGTTTGCAAGCCGGAGAAGGACACGGACCCTGGCAGCCCGGAGTTACTGGCAGGGAGCTTGCAGGACGAAACAGACCCGGAGTCCACAGCCATTGAAAACGCAGCGGGTCTCAGTGCGCGCGCGCAGCCCCCCGCGCAGAGGAAGAAGCGCTCGCGGGCCGCCTTCTCGCACGCGCAGGTCTTCGAGCTCGAGCGGCGCTTCGGCCACCAGCGCTACCTGTCCGGCCCCGAGCGCGCCGAGCTGGCGGCCTCGCTGAAGCTCACCGAGACGCAGGTCAAGATCTGGTTCCAGAACCGCCGCTACAAGACCAAGCGCCGCCAGATGGCCGCCGACCTGCTGGCGTCGGCCCCGGCGGCCAAGAAAGTGGCCGTGAAGGTGCTGGTGCGGGACGACCAGAGACAGTACGGCCCCGGGGAGCTGCTGCGGCCCCCGCTGCTGTCGCTGCAGCCCTCCTACTACTACCCGTACGCGTACTGCCTGCCCGCCTGGACGCTGTCGGCCTGCGCGGCGAACCAGTGA

Function

NR:

description
PREDICTED: homeobox protein zampogna-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0048703 embryonic viscerocranium morphogenesis biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09995 NKX3-2, BAPX1; homeobox protein Nkx-3.2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017576 True 777 mRNA 0.63 2 12129663 12130950

Neighbor

gene id symbol gene type direction distance location
AMCG00017575 NA coding upstream 11597 12098990 ~ 12118066 (+)
AMCG00017578 NA coding upstream 99705 12024533 ~ 12029958 (+)
AMCG00017577 NA coding upstream 105158 12024256 ~ 12024505 (+)
AMCG00017562 fbxl5,LOC106674637 coding upstream 250190 11867165 ~ 11879473 (+)
AMCG00017561 NA coding upstream 604649 11507876 ~ 11525014 (+)
AMCG00017581 rab28,LOC106600633 coding downstream 17319 12148269 ~ 12158241 (+)
AMCG00017580 rab28,LOC107717319 coding downstream 42894 12173844 ~ 12178118 (+)
AMCG00017585 NA coding downstream 262330 12393280 ~ 12397753 (+)
AMCG00017583 NA coding downstream 341998 12472948 ~ 12489169 (+)
AMCG00017584 wdr1,LOC106565198,LOC106583413 coding downstream 375640 12506590 ~ 12521063 (+)
G91490 NA non-coding upstream 154051 11975409 ~ 11975612 (+)
G91481 NA non-coding upstream 193324 11936101 ~ 11936339 (+)
G91480 LOC107549164,LOC106560248,LOC106584219 non-coding upstream 193702 11935627 ~ 11935961 (+)
G91387 NA non-coding upstream 712923 11416521 ~ 11416740 (+)
G91386 LOC106577485 non-coding upstream 714561 11408294 ~ 11415102 (+)
G91545 NA non-coding downstream 304794 12435744 ~ 12435984 (+)
G91549 NA non-coding downstream 359133 12490083 ~ 12490296 (+)
G91597 NA non-coding downstream 576360 12707310 ~ 12710716 (+)
G91619 NA non-coding downstream 734237 12865187 ~ 12891356 (+)
G91649 NA non-coding downstream 928906 13059856 ~ 13060646 (+)
G91452 cc2d2a other upstream 249164 11879614 ~ 11880499 (+)
G91281 LOC103376870 other upstream 2546383 9519773 ~ 9583280 (+)
AMCG00017527 tkfc,LOC107731922,LOC107095500 other upstream 3364760 8751713 ~ 8764903 (+)
AMCG00017526 paics,LOC107555752 other upstream 3428909 8687697 ~ 8700754 (+)
G90955 NA other upstream 3996809 8132368 ~ 8132854 (+)
AMCG00017600 NA other downstream 1065945 13196895 ~ 13259760 (+)
AMCG00017615 sorcs2,LOC106577493,LOC107590992,LOC107656200,LOC107722411 other downstream 1650316 13781266 ~ 13830819 (+)
AMCG00017620 htra3,LOC106577909 other downstream 1894686 14025636 ~ 14039063 (+)
G92046 NA other downstream 2946375 15077325 ~ 15084278 (+)
AMCG00017651 NA other downstream 2957182 15088132 ~ 15090829 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_007586 nkx3-2 coding NC_007125.7 CM002898.2 212867 ~ 215051 (-)
grasscarp (Ctenopharyngodon idella) CI01000270_00023508_00024522 NKX3.2, NKX3-2 coding CI01000270 null 22119 ~ 25330 (+)