AMCG00017580 (rab28,LOC107717319)


Basic Information

Item Value
gene id AMCG00017580
gene name rab28,LOC107717319
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 12173844 ~ 12178118 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017580
ttGATTTGGAGCACATGCGAACTGTTAAAGCTGACAAGCACCAACGCTTTTGCCAAGAAAATGGCCTCATCAGTCAGTTTGTTTCTGCCAAGACTGGAGATTCTGTCTTCCTTTGCTTTCAGCGGTTGGCCGCTGATATTCTTGGTGTAAAACTTAACAAAGCAGAAATGGAACAATCGCAGCGGGTAGTGAAGGCCGATATTGTGAACTACAGCCAGGAGCCCGTGGCCCGGCCTGTGAATCCTCCTCGGAGCTCcatgtgtgcagtgcag

Function

symbol description
rab28 Predicted to enable GTP binding activity and GTPase activity. Is expressed in cranial nerve II; pharyngeal arch 3-7 skeleton; retina; and retinal photoreceptor layer. Human ortholog(s) of this gene implicated in cone-rod dystrophy 18. Orthologous to human RAB28 (RAB28, member RAS oncogene family).

NR:

description
PREDICTED: ras-related protein Rab-28 isoform X2

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005525 GTP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017580 True 272 mRNA 0.50 3 12173844 12178118

Neighbor

gene id symbol gene type direction distance location
AMCG00017581 rab28,LOC106600633 coding upstream 15603 12148269 ~ 12158241 (+)
AMCG00017576 LOC106589762 coding upstream 42894 12129663 ~ 12130950 (+)
AMCG00017575 NA coding upstream 55778 12098990 ~ 12118066 (+)
AMCG00017578 NA coding upstream 143886 12024533 ~ 12029958 (+)
AMCG00017577 NA coding upstream 149339 12024256 ~ 12024505 (+)
AMCG00017585 NA coding downstream 215162 12393280 ~ 12397753 (+)
AMCG00017583 NA coding downstream 294830 12472948 ~ 12489169 (+)
AMCG00017584 wdr1,LOC106565198,LOC106583413 coding downstream 328472 12506590 ~ 12521063 (+)
AMCG00017586 NA coding downstream 368251 12546369 ~ 12565088 (+)
AMCG00017592 NA coding downstream 534039 12712157 ~ 12717400 (+)
G91490 NA non-coding upstream 198232 11975409 ~ 11975612 (+)
G91481 NA non-coding upstream 237505 11936101 ~ 11936339 (+)
G91480 LOC107549164,LOC106560248,LOC106584219 non-coding upstream 237883 11935627 ~ 11935961 (+)
G91387 NA non-coding upstream 757104 11416521 ~ 11416740 (+)
G91386 LOC106577485 non-coding upstream 758742 11408294 ~ 11415102 (+)
G91545 NA non-coding downstream 257626 12435744 ~ 12435984 (+)
G91549 NA non-coding downstream 311965 12490083 ~ 12490296 (+)
G91597 NA non-coding downstream 529192 12707310 ~ 12710716 (+)
G91619 NA non-coding downstream 687069 12865187 ~ 12891356 (+)
G91649 NA non-coding downstream 881738 13059856 ~ 13060646 (+)
G91452 cc2d2a other upstream 293345 11879614 ~ 11880499 (+)
G91281 LOC103376870 other upstream 2590564 9519773 ~ 9583280 (+)
AMCG00017527 tkfc,LOC107731922,LOC107095500 other upstream 3408941 8751713 ~ 8764903 (+)
AMCG00017526 paics,LOC107555752 other upstream 3473090 8687697 ~ 8700754 (+)
G90955 NA other upstream 4040990 8132368 ~ 8132854 (+)
AMCG00017600 NA other downstream 1018777 13196895 ~ 13259760 (+)
AMCG00017615 sorcs2,LOC106577493,LOC107590992,LOC107656200,LOC107722411 other downstream 1603148 13781266 ~ 13830819 (+)
AMCG00017620 htra3,LOC106577909 other downstream 1847518 14025636 ~ 14039063 (+)
G92046 NA other downstream 2899207 15077325 ~ 15084278 (+)
AMCG00017651 NA other downstream 2910014 15088132 ~ 15090829 (+)

Expression


Co-expression Network