AMCG00017581 (rab28,LOC106600633)


Basic Information

Item Value
gene id AMCG00017581
gene name rab28,LOC106600633
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 12148269 ~ 12158241 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017581
ATGTCGGATTCGGAGGAAGATAGTCAAGACCGACAGCTGAAAATTGTAATAATAGGAGACGGAGCCTCGGGAAAGACATCTCTGGCTACGCGATTTTCACAAGAGGCTTTTGGGAAacagtacaaacaaacaataggaCTGGATTTCTTTCTGAAAAGAATAACTCTGCCAGgGAACTTAAATGTCACACTGCAAGTATGGGACATAGGAGGTCAAACAATAGGAGGGAAGATGcttgacaaatacatttatggCGCTCAGGGTGTGCTTCTCGTTTATGACATCACGAACTACCAGAGCTTTGAGAACCTAGAAGACTGGTATGCCGTGGTAAAGAAGGTTAATGAAGAGGCAGAATGTCAGCCAGTAATTTCTCTGGTGGGAAATAAA

Function

symbol description
rab28 Predicted to enable GTP binding activity and GTPase activity. Is expressed in cranial nerve II; pharyngeal arch 3-7 skeleton; retina; and retinal photoreceptor layer. Human ortholog(s) of this gene implicated in cone-rod dystrophy 18. Orthologous to human RAB28 (RAB28, member RAS oncogene family).

NR:

description
PREDICTED: ras-related protein Rab-28

GO: NA

KEGG:

id description
K07915 RAB28; Ras-related protein Rab-28

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017581 True 390 mRNA 0.43 4 12148269 12158241

Neighbor

gene id symbol gene type direction distance location
AMCG00017576 LOC106589762 coding upstream 17319 12129663 ~ 12130950 (+)
AMCG00017575 NA coding upstream 30203 12098990 ~ 12118066 (+)
AMCG00017578 NA coding upstream 118311 12024533 ~ 12029958 (+)
AMCG00017577 NA coding upstream 123764 12024256 ~ 12024505 (+)
AMCG00017562 fbxl5,LOC106674637 coding upstream 268796 11867165 ~ 11879473 (+)
AMCG00017580 rab28,LOC107717319 coding downstream 15603 12173844 ~ 12178118 (+)
AMCG00017585 NA coding downstream 235039 12393280 ~ 12397753 (+)
AMCG00017583 NA coding downstream 314707 12472948 ~ 12489169 (+)
AMCG00017584 wdr1,LOC106565198,LOC106583413 coding downstream 348349 12506590 ~ 12521063 (+)
AMCG00017586 NA coding downstream 388128 12546369 ~ 12565088 (+)
G91490 NA non-coding upstream 172657 11975409 ~ 11975612 (+)
G91481 NA non-coding upstream 211930 11936101 ~ 11936339 (+)
G91480 LOC107549164,LOC106560248,LOC106584219 non-coding upstream 212308 11935627 ~ 11935961 (+)
G91387 NA non-coding upstream 731529 11416521 ~ 11416740 (+)
G91386 LOC106577485 non-coding upstream 733167 11408294 ~ 11415102 (+)
G91545 NA non-coding downstream 277503 12435744 ~ 12435984 (+)
G91549 NA non-coding downstream 331842 12490083 ~ 12490296 (+)
G91597 NA non-coding downstream 549069 12707310 ~ 12710716 (+)
G91619 NA non-coding downstream 706946 12865187 ~ 12891356 (+)
G91649 NA non-coding downstream 901615 13059856 ~ 13060646 (+)
G91452 cc2d2a other upstream 267770 11879614 ~ 11880499 (+)
G91281 LOC103376870 other upstream 2564989 9519773 ~ 9583280 (+)
AMCG00017527 tkfc,LOC107731922,LOC107095500 other upstream 3383366 8751713 ~ 8764903 (+)
AMCG00017526 paics,LOC107555752 other upstream 3447515 8687697 ~ 8700754 (+)
G90955 NA other upstream 4015415 8132368 ~ 8132854 (+)
AMCG00017600 NA other downstream 1038654 13196895 ~ 13259760 (+)
AMCG00017615 sorcs2,LOC106577493,LOC107590992,LOC107656200,LOC107722411 other downstream 1623025 13781266 ~ 13830819 (+)
AMCG00017620 htra3,LOC106577909 other downstream 1867395 14025636 ~ 14039063 (+)
G92046 NA other downstream 2919084 15077325 ~ 15084278 (+)
AMCG00017651 NA other downstream 2929891 15088132 ~ 15090829 (+)

Expression


Co-expression Network