AMCG00017583


Basic Information

Item Value
gene id AMCG00017583
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 12472948 ~ 12489169 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017583
AGGGCTGCAAGGCAGGCAAGACCaggacaaacagaaataaacaactgTGAATTGCAAAACAGATCCAGGAATCCGGTGCATTTTGCAGCAGAAGAATACTTTTTTAGTAGAGGACTAAGAAGAGTGAACAGCTATGAGCTTCCAACAATAATGgagCATGGAGTTCAGAGCATTGTGACTGACAATAGATGCTTTAACCCTGGACATCCCCATGAAACTGAATACAACACTGTAGAGGAGGAACCAGAACGCGTCAGGATCCTACCTGCAAGACCCTTGGATTCTGAGCCAGACTATGCAGaTAGAAGACGTGATCTGCCTCGACCACCACAACACTCCTCTCTGGCCCCGAGGAGATTACTGAATGCTCCTCCAAAACTTCCCAAAAGAAATACCTCAGgaCCAAGTGTGAACAGAGACTCAAAACCAACCAGGATCCCAATTATTCCAACAGCTGGTGAAAGAACTAATATTGCAGATTTCCAGaatgtaCAGCCTCCACCAAGACCTCCTAAGCCAGTTCCAAGAGAACGCCAGCCTCTTCCTCCAGAACCAAGGATTTCAAAACCAGATTCACCAAGTACACACTCTGAGGCACCTCTAATGCCAGTCCCAGCAAGAAGAAatGTAAATTGTCAATCCAGTGtttttcaagcTTCCCCAACTGCAACTCCTCGTGAACCTCCAAGGTGCTCACAAGATCTGGAATTCAAAGACAGTCTAAATTCAAGTTCTATCAGGCCATCACATGACCAAGGATCCTTAATTACAGCTGTTACTAGAAATAAGCCAAACTACAATCATGAGTGGCcacaagttaaaaaacaaaccaaaaaacagagACCTTCTTCTGAGCACTATAATTTTGAGACACCCAGGGATCCAGGACACAGAACAATTCAGatttcacaTCACCATAACTGGTACATTGGAGCATGTGATCGATATGAAGCAGAAAACGCCCTGTATTCCATGAACACGGATGGAGGGTTCTTAGTGCGTGACTGCTCAAAGAAGGTTAATGATGAGCCCTATGTCCTGGCAGTGTTTTATGGAAACAAAGTGTACAACATTAAAATTAGATACATAGAGAGCAGCCAAAAGTTTGCACTAGGAACAGGACTATGGGGAAATCatATGTTTGATTCTGTAAGTGACATCATTGAATTCCACAAGGTTTTTCCATTAGTCCTGATTGATGGAAAGGACAAATCAGGGAAACAAAAGGACAAGTGTACCCTGAcatatgcattttcaaaagacaaaaaaaaccaaATACTGGGTTAGTTCTAGTTCTTCATGAAGTTCTTCATGTTATCTGTGTAACTGTGATATCAGTAcatgaatagaaaaaaaaaatcactctgTAATAGTTAAATTAACAAGTGCCTCATCAACCCTATGTTGATAAGAAATActgatgttaaatatttattaagctAACTATAAAGGAGTCTACCAGTCTATCTATTTCttttgcatataaatatattatatattcatagtGTTTATTAGTCTATTAATGTATTGAAGTGCTACAGAATCTAATATATCCACTACAAAAGGATTTCAATGAATACTAGAACATGTCACCATTTTAGAGAATGTTCCTTGTATAGAGTTATTTGTGCAAATCTGTGTAGATTGCTTATATTTCATAGAACACTGATGCCTCctaattactctgtgttccctgaaattaacaaaaatctTTCTTTGTTGTGTCAGTGAATCTTATAATCCTTTTTATCATAACCAGTGTACTCTATTTAACGTGGTATTTTTTGGAATACTGGGCTAATAAAAGGATGCCTTCTCTGTGTTAAAA

Function

GO: NA

KEGG:

id description
ko04672 Intestinal immune network for IgA production
ko05340 Primary immunodeficiency

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017583 True 1828 mRNA 0.39 18 12472948 12489169

Neighbor

gene id symbol gene type direction distance location
AMCG00017585 NA coding upstream 75195 12393280 ~ 12397753 (+)
AMCG00017580 rab28,LOC107717319 coding upstream 294830 12173844 ~ 12178118 (+)
AMCG00017581 rab28,LOC106600633 coding upstream 314707 12148269 ~ 12158241 (+)
AMCG00017576 LOC106589762 coding upstream 341998 12129663 ~ 12130950 (+)
AMCG00017575 NA coding upstream 354882 12098990 ~ 12118066 (+)
AMCG00017584 wdr1,LOC106565198,LOC106583413 coding downstream 17421 12506590 ~ 12521063 (+)
AMCG00017586 NA coding downstream 57200 12546369 ~ 12565088 (+)
AMCG00017592 NA coding downstream 222988 12712157 ~ 12717400 (+)
AMCG00017593 NA coding downstream 232072 12721241 ~ 12727616 (+)
AMCG00017596 msx1a,msx1,LOC107682425 coding downstream 375207 12864376 ~ 12865629 (+)
G91545 NA non-coding upstream 36964 12435744 ~ 12435984 (+)
G91490 NA non-coding upstream 497336 11975409 ~ 11975612 (+)
G91481 NA non-coding upstream 536609 11936101 ~ 11936339 (+)
G91480 LOC107549164,LOC106560248,LOC106584219 non-coding upstream 536987 11935627 ~ 11935961 (+)
G91387 NA non-coding upstream 1056208 11416521 ~ 11416740 (+)
G91549 NA non-coding downstream 914 12490083 ~ 12490296 (+)
G91597 NA non-coding downstream 218141 12707310 ~ 12710716 (+)
G91619 NA non-coding downstream 376018 12865187 ~ 12891356 (+)
G91649 NA non-coding downstream 570687 13059856 ~ 13060646 (+)
G91683 NA non-coding downstream 651493 13140662 ~ 13140878 (+)
G91452 cc2d2a other upstream 592449 11879614 ~ 11880499 (+)
G91281 LOC103376870 other upstream 2889668 9519773 ~ 9583280 (+)
AMCG00017527 tkfc,LOC107731922,LOC107095500 other upstream 3708045 8751713 ~ 8764903 (+)
AMCG00017526 paics,LOC107555752 other upstream 3772194 8687697 ~ 8700754 (+)
G90955 NA other upstream 4340094 8132368 ~ 8132854 (+)
AMCG00017600 NA other downstream 707726 13196895 ~ 13259760 (+)
AMCG00017615 sorcs2,LOC106577493,LOC107590992,LOC107656200,LOC107722411 other downstream 1292097 13781266 ~ 13830819 (+)
AMCG00017620 htra3,LOC106577909 other downstream 1536467 14025636 ~ 14039063 (+)
G92046 NA other downstream 2588156 15077325 ~ 15084278 (+)
AMCG00017651 NA other downstream 2598963 15088132 ~ 15090829 (+)

Expression


Co-expression Network