AMCG00017592


Basic Information

Item Value
gene id AMCG00017592
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 12712157 ~ 12717400 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017592
CCCACTACAATTCAATTAGACCTAATAGACCTAAAGCACATCCTTGTAATACTGCAGAAACTACAGTACATGACATTCGAGCAATCCTTTACTCCTTTTCTTCAAACATGCTCTATCCTCTCGTggaaaaaaagtttacaaacattgttttatctGTGTATAACACTCCTCTCCATTGCTATTCGGGATCATCTTTATAGTTTAGTGCACATTCCAGGTGTCGGAACAGTTTATAgataaatgtttctgtaaacTAAAGATTTATGCACAGTATTCCTACTTCACTTTAATTATGACCACCGgtgtatgtacatttattaattgtattgtgtctgttttttgttttgtgtgtgtttcacctCCAAGTCATGTATACAAGCCTGATGAGAACAATCCCAATTTCCTGTGTCGGATCTGGAATGAAGTTTGATCATGGAGTCTCTGTCCAGTCACAGCTCCTACCTCCTACAGCAGCTCCACGAGCAGCGAATCCAGGGACTGTTATGTGACTGCATGTTGGTAGTCAAGGGTGTCTGTTTCAAGGCCCATAAAAATGTCTTGGCTGCCTTTAGCTCATATTTTAGGTCCTTGTTCCAGAACTCACCAGGACAGAAGAACGACGTGTTTCATCTTGACATTACAGACGTAGGAGGCATTGGGCAGATTCTGGATTTTATGTATACATCCCATCTCGACCTGAATCAGGACAACGTTCAGGCCCTGTTAGATGTGGCTCAGTGTCTGCAGGTCCCGAACGTGCTCAACATGTGCAATCATTTCCTGAAGCCCTACACTCCTGCCGTGGAAGCCCCAGGAAGCCTCCCTGGCAGTGCCTCGTTTTCTCTCCCGGCCGTTCTGACAATAGAGACTGAATGCATGCTCGGGGCCACTCTGCCTTCTGAGATGGGACTACACTGCCCCTCTGAGGCCCAGAAACCGGCCTGTGCGCCATCGGACATTGACCTTTCTAGGAGACCACAGGCCCTTTTGCAAACCCAGACCTTTGACGCTCTAAGCAGTGCCCCTGCTGCCCCTGATAAGCTGTCAACTCACACCTACAAGCTGCGTAACTTCTACagcaaacaatattttaaacaaaatccaGCATTAAATGGGAGTTTGAACCCACCGCTAAATACCGTGGCAGAGGAGCACTTCTCATCCAGTGTTACTGACTCAAACACTCCAGTTGATATACCAGTAGGTGCTGTGAATACTGCTTCTGAGTCTCAAGGCCCTGTGTCTACTTTTATGATGCCACCCGCAACAGAAGACTCTGAATGTCAGAGCTCTGGAGGGAAGAGTTCTCCCGTTAGTCGGCAAGTTCGGACAAAAAAGGCTGTCTATCTGAAGAAATACAACTACCTACGGTCCCAGAAAGCTTTGGAGGAATCTACATTGCAGCCAGCCAAGACGGACAACAAAACTCCAGTTGATGCAAATGAAGCCGAGGTTATAGACCAACATGTAGGTGACTTGCCTGGGGTTAGCCTAATGGAGGAAGAAGTAGGTGAACCTGCTAATGTGTCATGCTCCCAACTTGGAAGCTCCTCCCCTGCTCACCTGGAGGAGCCTGAGCACAATTTAGTAGCTAACTCCACAGATGCTGCCCTACTCCAGAACTACCAGAAGCAATATTGTTGTGAGATGTGTGGAAAGACATTCAAGCACCCCAGTAATCTGGAACTCCATAAGCGCTCACACACAGGTAATCTACAGACTCATTTACGGCGACACTCAGGCGAAAAACCATACATTTGTGAAATCTGCGGGAAAAGCTTCGCAGCCTCTGGTGACGTTCAGCGGCACATTGtgattcacacaggagagaaacctcATCTGTGTGACATCTGTGGCCGAGGGAAGAGTTTTGCCGGTTCTGGAGACTTGCGGAGACACGTGCGGACACACACGGGCGAGCGGCCCTACACTTGTGAGACCTGTGGCAAGTGCTTCACCCGCTCAGCTGTCCTGAGGAGACACAGGACCGTGCACTGCAAGAGCGCCCAGGACAGCCCGGCGGCGGAGGAGCTTGCCAGCGCGGTGGACAGCCCCTTCCTGCAGACGGTGTGCCACAAATCCCAGGACTCGGATTCTTTTGCGACCCTGATGTCAGACAAGCTGCCCCCGGCCCCGAGCGAGACCCCTCCGGGGGTTGACTTCGCCCCGGGCTCTTCGGCTTCCTTCTCCGAGCTCCGGTCCATGGTGCCTCACCACCTGATAGCTCAGCAGGACAAGTTGTGTCCGGATCCCATTAAACTCCCAAAGCCTCCTGATTCATTTGCATACACCGAGGAAAACAGCGCGAACAGCGAGGAGACGCTGCAGCCATCCAGCACGTCCATGATCCGCCCGTCCCTGACGGCGCTGGATAATCACTGCAGTCTCCCTGTGGGAAACCATCGCCTGAGTTCTGCCTCGTTCCGGAGCAATGAGGCGCCCTTCTTCTCCAGCGTGACACTGTGGGGATTAGCGATGAAGACGCTGCAAAATGATAACGAACTGGAGCAATAAATGGGCTAATTGCTAAATGTAAAAAGCTTGATTGTAAAGGTTTActgtaaaaaggaaaataaactaatctatatacacaaaatatttttttactgaattgTTTAAACATGAATGGAT

Function

GO: NA

KEGG:

id description
K24807 ZBTB49; zinc finger and BTB domain-containing protein 49

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017592 True 2631 mRNA 0.49 5 12712157 12717400

Neighbor

gene id symbol gene type direction distance location
AMCG00017586 NA coding upstream 147069 12546369 ~ 12565088 (+)
AMCG00017584 wdr1,LOC106565198,LOC106583413 coding upstream 191094 12506590 ~ 12521063 (+)
AMCG00017583 NA coding upstream 222988 12472948 ~ 12489169 (+)
AMCG00017585 NA coding upstream 314404 12393280 ~ 12397753 (+)
AMCG00017580 rab28,LOC107717319 coding upstream 534039 12173844 ~ 12178118 (+)
AMCG00017593 NA coding downstream 3841 12721241 ~ 12727616 (+)
AMCG00017596 msx1a,msx1,LOC107682425 coding downstream 146976 12864376 ~ 12865629 (+)
AMCG00017599 stk32b,stk32a,LOC108414397,LOC108278444 coding downstream 207450 12924850 ~ 12931836 (+)
AMCG00017597 NA coding downstream 233932 12951332 ~ 12970031 (+)
AMCG00017595 NA coding downstream 344341 13061741 ~ 13078027 (+)
G91597 NA non-coding upstream 1441 12707310 ~ 12710716 (+)
G91549 NA non-coding upstream 221861 12490083 ~ 12490296 (+)
G91545 NA non-coding upstream 276173 12435744 ~ 12435984 (+)
G91490 NA non-coding upstream 736545 11975409 ~ 11975612 (+)
G91481 NA non-coding upstream 775818 11936101 ~ 11936339 (+)
G91619 NA non-coding downstream 147787 12865187 ~ 12891356 (+)
G91649 NA non-coding downstream 342456 13059856 ~ 13060646 (+)
G91683 NA non-coding downstream 423262 13140662 ~ 13140878 (+)
G91726 NA non-coding downstream 805241 13522641 ~ 13526149 (+)
G91727 NA non-coding downstream 811381 13528781 ~ 13533210 (+)
G91452 cc2d2a other upstream 831658 11879614 ~ 11880499 (+)
G91281 LOC103376870 other upstream 3128877 9519773 ~ 9583280 (+)
AMCG00017527 tkfc,LOC107731922,LOC107095500 other upstream 3947254 8751713 ~ 8764903 (+)
AMCG00017526 paics,LOC107555752 other upstream 4011403 8687697 ~ 8700754 (+)
G90955 NA other upstream 4579303 8132368 ~ 8132854 (+)
AMCG00017600 NA other downstream 479495 13196895 ~ 13259760 (+)
AMCG00017615 sorcs2,LOC106577493,LOC107590992,LOC107656200,LOC107722411 other downstream 1063866 13781266 ~ 13830819 (+)
AMCG00017620 htra3,LOC106577909 other downstream 1308236 14025636 ~ 14039063 (+)
G92046 NA other downstream 2359925 15077325 ~ 15084278 (+)
AMCG00017651 NA other downstream 2370732 15088132 ~ 15090829 (+)

Expression


Co-expression Network