AMCG00017601 (ppp2r2c,LOC106604865,LOC106611902)


Basic Information

Item Value
gene id AMCG00017601
gene name ppp2r2c,LOC106604865,LOC106611902
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 13264231 ~ 13273833 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017601
TTTGAGGAGCCAGAAGATCCAAATAACCGGTCCTTCTTCTCTGAAATAATCTCCTCGATCTCCGATGTCAAGTTCAGTCACAGTGGACGCTACCTGTTAACAAGAGATTACCTCACTGTCAAAGTCTGGGACctgaacatggaaaacaaaccaattgaAACATATCAGgTTCACGATTACCTCCGGAGCAAGCTTTGTTCCTTGTATGAGAATGACTGCATCTTTGACAAGTTTGAATGTGCATGGAATGGTACAGATAGtgtaatTATGACAGGCGCCTATAATAACTTTTTCCGGATGTTCGACCGCAACACGAAGAGGGACGTGACGCTGGAGGCGTCGCGGGAGAGCAGTAAGCCACGGGCCGTGCTGAAGCCCCGCCGCGTGTGCACTGGGGGCAAGCGGCGCAAGGACGATATCAGTGTGGACAGTTTGGACTTCACCAAGAAAATCTTACACACAGCCTGGCACCCGGCACAGAACATCATTGCCATCGCAGCGACAAACAATCTGTACATATTTCAGGATAAAGTCAACTCG

Function

symbol description
ppp2r2c Predicted to enable protein phosphatase regulator activity. Predicted to be involved in peptidyl-serine dephosphorylation. Predicted to be part of protein phosphatase type 2A complex. Predicted to be active in cytosol.

NR:

description
PREDICTED: serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017601 True 540 mRNA 0.49 3 13264231 13273833

Neighbor

gene id symbol gene type direction distance location
AMCG00017607 NA coding downstream 21651 13237135 ~ 13242580 (-)
AMCG00017606 NA coding downstream 38228 13216299 ~ 13226003 (-)
AMCG00017604 NA coding downstream 84261 13144131 ~ 13179970 (-)
AMCG00017605 NA coding downstream 122159 13107005 ~ 13142072 (-)
AMCG00017602 LOC107742497 coding downstream 158361 13080131 ~ 13105870 (-)
AMCG00017603 ppp2r2c,LOC106516650 coding upstream 11940 13285773 ~ 13304335 (-)
AMCG00017614 NA coding upstream 266752 13540585 ~ 13542138 (-)
AMCG00017616 grpel1 coding upstream 275592 13549425 ~ 13553804 (-)
AMCG00017617 LOC107738968,LOC107733469,LOC107584377,LOC107657296,LOC107665873 coding upstream 557513 13831346 ~ 13867377 (-)
AMCG00017624 NA coding upstream 637252 13911085 ~ 13970970 (-)
G91576 NA non-coding downstream 607898 12656069 ~ 12656333 (-)
G91562 wdr1,LOC106565198 non-coding downstream 743017 12517080 ~ 12521214 (-)
G91556 wdr1,LOC107717326,LOC106583413 non-coding downstream 755088 12506627 ~ 12509143 (-)
G91553 NA non-coding downstream 764284 12496291 ~ 12499947 (-)
G91539 NA non-coding downstream 922496 12341442 ~ 12341735 (-)
G91850 NA non-coding upstream 770288 14044121 ~ 14044527 (-)
G92006 NA non-coding upstream 1526257 14800090 ~ 14800401 (-)
G92024 NA non-coding upstream 1650560 14924393 ~ 14925960 (-)
G92049 NA non-coding upstream 1780630 15054463 ~ 15054684 (-)
G92050 NA non-coding upstream 1781459 15055292 ~ 15056623 (-)
AMCG00017582 NA other downstream 941861 12307781 ~ 12322370 (-)
AMCG00017569 NA other downstream 1363631 11877360 ~ 11900600 (-)
AMCG00017563 NA other downstream 1757411 11504024 ~ 11506820 (-)
AMCG00017556 NA other downstream 2767127 10361300 ~ 10497104 (-)
G91119 NA other downstream 4508324 8755288 ~ 8755907 (-)
AMCG00017631 NA other upstream 1159325 14433158 ~ 14484818 (-)
AMCG00017638 scoc,LOC103463814,LOC103132857 other upstream 1486235 14760068 ~ 14764832 (-)
G92124 LOC101154678 other upstream 2593114 15866947 ~ 15867647 (-)
G92129 NA other upstream 2756569 16030402 ~ 16030905 (-)
AMCG00017663 NA other upstream 4113651 17387484 ~ 17395049 (-)

Expression


Co-expression Network