AMCG00017603 (ppp2r2c,LOC106516650)


Basic Information

Item Value
gene id AMCG00017603
gene name ppp2r2c,LOC106516650
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 13285773 ~ 13304335 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017603
GATATCATTTCCACAGTTGAGTTCAACCAGACGGGGGAACTGCTGGCGACTGGGGACAAGGGAGGCCGTGTTGTTATATTCCAGAGGGAACCTGAGAGTAAAAATGAGCCTTGCTGCCAGGGAGAGTACAATGTTTACAGCACCTTCCAGAGCCATGAGCCCGAGTTCGATTACCTGAAGAGCCTGGAAATCGAGGAGAAGATCAACAAAATCAGATGGCTGCCTCAACAGAATGCTGCCCACTTCCTTCTGTCAACCAATGataaaacaattaaattatggAAAGTTAGCGAAAGAGATAAGAGACCGGAAGGGTACAACCTGAAAGATGAAGAAGGAAGGATGAAAGATCTTTCAACGGTGACATCTCTACAGGTGCCAGTCCTGAAACCCATGGACCTGATGGTAGAGGTGAGCCCACGAAGGATCTTTGCCAATGCTCACACCTACCATGTGAACTCCATCTCCGTCAACAGTGACTGTGAGACCTACATGTCTGCTGATGACCTCAGGATTAATCTCTGGCACCTGGCCATCACGGACAGGAGCTTCAACATTGTTGACATCAAACCTGCCAACATGGAGGAGTTGACGGAGGTCATCACGGCCGCTGAGTTCCACCCTCACCACTGTAACCTGTTTGTTTACAGCAGCAGTAAAGGGACGCTCCGTCTGTGTGACATGAGGGCCTCGGCTCTTTGTGACAAGCACTCCAAACGTAAGCCACTGTACCGCACAGGGCAGTCCCCAGCCCAAGCCCAGttgtttgctgtgttttcatATAATGAA

Function

symbol description
ppp2r2c Predicted to enable protein phosphatase regulator activity. Predicted to be involved in peptidyl-serine dephosphorylation. Predicted to be part of protein phosphatase type 2A complex. Predicted to be active in cytosol.

NR:

description
PREDICTED: protein phosphatase 2, regulatory subunit B, gamma isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017603 True 789 mRNA 0.49 5 13285773 13304335

Neighbor

gene id symbol gene type direction distance location
AMCG00017601 ppp2r2c,LOC106604865,LOC106611902 coding downstream 11940 13264231 ~ 13273833 (-)
AMCG00017607 NA coding downstream 43193 13237135 ~ 13242580 (-)
AMCG00017606 NA coding downstream 59770 13216299 ~ 13226003 (-)
AMCG00017604 NA coding downstream 105803 13144131 ~ 13179970 (-)
AMCG00017605 NA coding downstream 143701 13107005 ~ 13142072 (-)
AMCG00017614 NA coding upstream 236250 13540585 ~ 13542138 (-)
AMCG00017616 grpel1 coding upstream 245090 13549425 ~ 13553804 (-)
AMCG00017617 LOC107738968,LOC107733469,LOC107584377,LOC107657296,LOC107665873 coding upstream 527011 13831346 ~ 13867377 (-)
AMCG00017624 NA coding upstream 606750 13911085 ~ 13970970 (-)
AMCG00017622 NA coding upstream 705579 14009914 ~ 14017592 (-)
G91576 NA non-coding downstream 629440 12656069 ~ 12656333 (-)
G91562 wdr1,LOC106565198 non-coding downstream 764559 12517080 ~ 12521214 (-)
G91556 wdr1,LOC107717326,LOC106583413 non-coding downstream 776630 12506627 ~ 12509143 (-)
G91553 NA non-coding downstream 785826 12496291 ~ 12499947 (-)
G91539 NA non-coding downstream 944038 12341442 ~ 12341735 (-)
G91850 NA non-coding upstream 739786 14044121 ~ 14044527 (-)
G92006 NA non-coding upstream 1495755 14800090 ~ 14800401 (-)
G92024 NA non-coding upstream 1620058 14924393 ~ 14925960 (-)
G92049 NA non-coding upstream 1750128 15054463 ~ 15054684 (-)
G92050 NA non-coding upstream 1750957 15055292 ~ 15056623 (-)
AMCG00017582 NA other downstream 963403 12307781 ~ 12322370 (-)
AMCG00017569 NA other downstream 1385173 11877360 ~ 11900600 (-)
AMCG00017563 NA other downstream 1778953 11504024 ~ 11506820 (-)
AMCG00017556 NA other downstream 2788669 10361300 ~ 10497104 (-)
G91119 NA other downstream 4529866 8755288 ~ 8755907 (-)
AMCG00017631 NA other upstream 1128823 14433158 ~ 14484818 (-)
AMCG00017638 scoc,LOC103463814,LOC103132857 other upstream 1455733 14760068 ~ 14764832 (-)
G92124 LOC101154678 other upstream 2562612 15866947 ~ 15867647 (-)
G92129 NA other upstream 2726067 16030402 ~ 16030905 (-)
AMCG00017663 NA other upstream 4083149 17387484 ~ 17395049 (-)

Expression


Co-expression Network