AMCG00017613 (LOC106577489)


Basic Information

Item Value
gene id AMCG00017613
gene name LOC106577489
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 13501947 ~ 13518167 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017613
GAAAATGGAATCCACCTGTTTAATGGTACAGAAGCTTCATTTACCTATGTTTTTATGAATACTAACCAGATGAATGTCTGTCTGCAGGAATATGAAACGAGAACTGGACGACCTCACAGTCCCCCTTCTCCTAAACAGAGTGTGAGGAAGAACCTGGACTTTGAGCCTCTGTCAACCACGGCACTTATCCTCGAGGACAGACCAGCGAATCTCCCTGCTAAGCCTGTTGAAGAAGCTCAGAAGCACAGACAGCAGTATGAAGAGATGGTTGCCCAAGCAAAGAAAAgagaaatgaaagaggctcagaaaagaaagaaacaacttGAAGAGAGATGCAAACTGGAAGAAAGCATCACAAATGCAGCACACACCTGGAATCAGGAGATCTTACCAAACTGGGAAACCATGTGTACTGCTCGGAAGGTGCGCGAGATGTGGTGGCAGGGAGTGCCCCCTAGCGTGAGGGGAAAGGTGTGGAGCTTAGCAGTGGGCAATGAGCTAAACATCACTCATGAACTGTACAATATCTGTCTGGCGCGAGCCAAAGAGAAGTGGAAGTCACTGCCAGCGTCTGTTCCAGAGACAGAAAGCGAAGATACTGGATTATCATTGGCAGACAGAGAAGCAAGCCTGGAGCTTATAAAATTGGATATTTCCAGAACATTTCCTAATCTCTGTATTTTCCAGAAGGGTGGCCCATACCATGACATGCTGCACAGCATTCTGGGAGCATACACCTGCTACCGCCCCGATGTGGGATATGTACAGGGAATGTCCTTTATTGCTGCAGTTTTGATTCTTAACCTTGACACTGCAGATGCCTTCATTGCTTTTGCCAACCTGTTGAATAAACCTTGCCAGATGGCGTTCTTTCGAGTGGACCACAGCCTTATGTTGACCTATTTTGCAGCGTTTGAAGTATTCTTTGAAGAAAACCTACCAAaGATTTTCACCCTGTACAGTAAGTCCTTACCCCTGGACCTGGCCTGCCGTGTCTGGGATGTTTTCTGCCGCGACGGGGACGAGTTTCTCTTTCGCACGGCCCTGGGCATATTGAAACTTTATGAGGACATTCTGACCAAAATGGACTTCATCCACAATGCTCAGTTTCTTACCAAGCTGCCAGAGGACATCTCGGCAGAGGAACTGTTTATAGCCATCGCTTCCATCCAGATGCAAAGCAAGAACAAGAAATGGGCTCAGGTACTTCAAGCACTGCAGAAAGACAACCGCGAGCAGGAACGGGGAAGTCCTGTACTAAAACGTTGAATCAGCTGAACAAAGCCATTTCTACAAACAACATGCTGACAGATCTCCCAAAAGAATGAAGCTGGCTCTTTACAAGTGATGAGTATATTGTGAACAATGAAGCCCCTGAAACAAAGGGCTTGTGTTGTAGTCTTCACACTGGACTTGGCCTTAACCAGATCTCTTGAGGAAATTCTACCAAGAACTAAAGCCTTAAACTGACCTTATACCCTTTCCAATGTAACCATCTAAGGGTACAGGTGTCTGGAGAGAGGGGGGTGAAGGATGTCAGAATGTAAACCTTCCATCTTCTATCAGGTTTTATATTGAAGTGATGCGAGGTCCAATATGAACTTCCTACTCcttggtattttgttttgtttgtttgacaatGTTTTGGCTGGAATTGTGTTTGTTGAGTTTGGTTTATTCAGTATACAACGAGAGGTGAAAATCTAAGGGAAAGGTTAGTGTCTGAAGTAGTTTAATTGGCCTGAAGCATTAGATTCACGTGAACACATTTGTTAAAATTGCAATCTTTATAGTACTAAAAGACACTGGTAACAAACAATTCAGTATGGGTCTGTGTTGATGTTAAGAGAAACACTGGataaaagttttttgttttttcatttaagtgTTCAGAACTTGAATTGCTTAAACGTGTGGTTGAAGTGTAACTAAACCCAAAGTGGTATGTAGAGAATCGGCAATGCAAGAGCTCAGTTAGTCTCAGAAAGGTGCTTGAACAGCATCTGTGCTGCCTCTttttgcacatttcattttgCAAGTGATGTTTTAGATGTGATTGATCTAAAGACAATCTTATTTTGGTCACCTACGCTGTCATAGTTTTGTTGTAAAACTGAGTCACTATAACTTTGTCTGTTTAGCTTTTGCTTTTCCGCAATGTGTTGTTCTAAATCATTTGGAATAACGTAATTTTCTCTGGTGATACATTACTAATAAAAGTAGTGCATCACAGAGATTGTACATCTTGTAATAGCTTCTCCAaaagtgtacatttgttttgtttgtatcatatgatttgtgtttgtgtacattttacaagatgttttttgtatataagAGTACAGtcacaaaatctgaaatgttgACTGAAATGCTGCTCCACCAAATTACTTGTTTTGCTACTGATTTTAATGTGCAATAGAAAAGGGTGGGAGAGTTCATGTAtaatttgatcatatatattttaaaaggattatTAATAATTCCTTGTTTAAAATCTACTTTTAACAAGGCTTGAAACTTGGGGTACctactttttaattaatcaagtgCATGAAATAAATTGGAtgcatatttgcatttttttttaacatacaaatatatatatttatgatatcCAGCAAAGCTAAGGGTAGATTATGAAATATCTCAGTCTCCTTGTTGACATTAATGGGAAGGAATACATTATaccatttcatgtattttatgagCTACAAACCACAACCCTGaagaaatacacttttctggATAAGATGGCAGGTGGCAAGATTGGCACAGTAAGAAGGAGTTTAAActtatatataggctatatattttgGCGTTACACTTCACACTGTGAAGGTGTATTTTTAGATTTCAAGTAACCCACCCACCATACTATGAATTGCATTTCCCTGCCCTTTTTATGTGCggttcgttttttttttgtttgcttatttggtCTGCTCATCCATGTGTGTATGTCAGAATATTTGTCTCACTGTGTCTATTAGAGCTGCCCAGACTGGTGGCTCACAGTAGCTTCCCTTACATGTGCTGGGAGCAGGAAAAACGTGTGGGGAAAATGATTTTTAAGAACTGTCATTCTCTTTAAAAGGTAGTTTTCCtgtgatttaagaaaaatatttatctttgttacaaaaaaaaaagttatttttccaAAGCTACTTGTTACTTTCCAGAGTGTGCTGCTGCTtcttaaaactgaaatacaaaccAATAGTTGACCCATGGAGACATGGTCCCTATGCAGTGCATTTCCATTATGTTGTGACATTCCCAATTCTAGGTTTCTAATATATGCTGACACTggacacttgttttgtttttatgtattaatgaatACACTCCTCCTTCCCGTGTGAAGTAGAAAATATTGCAATGAGTTTTACACAAGTTATTACAAATGGTTACGCCTCACCCCACTCACAGGTGTTAACAATTATTTGTAGTCTGTGGGCTTTGTGGACTGGATATTTGTGAGGTTTGTTACATTGGTAGTGGTTTCTTGTGCACATGATTGCTTAAATCAGGTACTTGTCTTTGTGAACATCAAggaaaagcactttttttttcatgggaCCTTTgttctatattttaaatgttatttaaattaattgttattcAATTATACCTTTTTAAACATTGCTTTAACAAGTTGTGGTGCCTCCATTCCAAGTTAATCTCCTCAGTGCTGTCGTTTGTCTTGAAATATACACATTGAAAGGACTCTCGCGCAGATAAAgtatgtttctttgtgtttgtacaCTATTTATAACCCCGTGTCAGtcttgaatgtgtgtttttccatgttttcaaaaatattttctacTAATATGCATTCTTGGACAAGTAAAGCTTGTTAGACTTATTATTCTCTGAAAACAGTAAAGTAATGGTTCAGGAATGCACATGTATAGCATGGATCCAAGCTAGAGAAAACATGCCTCTATATGGCATATGACATGGCATTATAATCATCTAGAGATCAGATAAAATCAGATTAGAGATCTGCCACTAACTGCAGAATTGTGTTTTCAATCATGACATTTAAAGTGCTATTGTGAAACAAACTAAAGTTACCATCTACAAGACGAAGTTGGATAGCAGAATACAATCAAatcaatgtgttgtgtttttaattatatttattttattgttttttgtttttcattttaatgtataactaCCAAATATCCAAGGGACCTAATTTGAGTTCATTTTGGGGATTTGGAGTAGAAACTGGAACTGTACCTTTCACCTGAAgtgtaaatactgttttattaaataaagctCTGTAAATATACAA

Function

NR:

description
PREDICTED: TBC1 domain family member 14-like isoform X1

GO: NA

KEGG:

id description
K20167 TBC1D14; TBC1 domain family member 14

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017613 True 4309 mRNA 0.38 11 13501947 13518167

Neighbor

gene id symbol gene type direction distance location
AMCG00017611 NA coding upstream 27136 13446501 ~ 13474811 (+)
AMCG00017609 NA coding upstream 72773 13428148 ~ 13429174 (+)
AMCG00017608 NA coding upstream 79501 13419796 ~ 13422446 (+)
AMCG00017610 NA coding upstream 118496 13371615 ~ 13383451 (+)
AMCG00017595 NA coding upstream 423920 13061741 ~ 13078027 (+)
AMCG00017612 tada2b,LOC107656199,LOC107739399,LOC107653294,LOC107722428 coding downstream 24294 13542461 ~ 13548563 (+)
AMCG00017619 NA coding downstream 475424 13993591 ~ 14009256 (+)
AMCG00017618 NA coding downstream 550607 14068774 ~ 14084436 (+)
AMCG00017626 gpr78,LOC106608662,LOC105020663 coding downstream 611466 14129633 ~ 14132463 (+)
AMCG00017621 NA coding downstream 617433 14135600 ~ 14151779 (+)
G91683 NA non-coding upstream 361069 13140662 ~ 13140878 (+)
G91649 NA non-coding upstream 441301 13059856 ~ 13060646 (+)
G91619 NA non-coding upstream 610591 12865187 ~ 12891356 (+)
G91597 NA non-coding upstream 791231 12707310 ~ 12710716 (+)
G91549 NA non-coding upstream 1011651 12490083 ~ 12490296 (+)
G91726 NA non-coding downstream 4474 13522641 ~ 13526149 (+)
G91727 NA non-coding downstream 10614 13528781 ~ 13533210 (+)
G91740 NA non-coding downstream 340050 13858217 ~ 13913757 (+)
G91849 NA non-coding downstream 525917 14044084 ~ 14044528 (+)
G91931 NA non-coding downstream 1000065 14518232 ~ 14539104 (+)
AMCG00017600 NA other upstream 242187 13196895 ~ 13259760 (+)
G91452 cc2d2a other upstream 1621448 11879614 ~ 11880499 (+)
G91281 LOC103376870 other upstream 3918667 9519773 ~ 9583280 (+)
AMCG00017527 tkfc,LOC107731922,LOC107095500 other upstream 4737044 8751713 ~ 8764903 (+)
AMCG00017526 paics,LOC107555752 other upstream 4801193 8687697 ~ 8700754 (+)
AMCG00017615 sorcs2,LOC106577493,LOC107590992,LOC107656200,LOC107722411 other downstream 263099 13781266 ~ 13830819 (+)
AMCG00017620 htra3,LOC106577909 other downstream 507469 14025636 ~ 14039063 (+)
G92046 NA other downstream 1559158 15077325 ~ 15084278 (+)
AMCG00017651 NA other downstream 1569965 15088132 ~ 15090829 (+)
AMCG00017652 NA other downstream 1575024 15093191 ~ 15106835 (+)

Expression


Co-expression Network