AMCG00017616 (grpel1)


Basic Information

Item Value
gene id AMCG00017616
gene name grpel1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 13549425 ~ 13553804 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017616
CGGCAGTCATTTTGACCTTTAAACTCATCCCCAGCGCACTTCCTGTTTGACACCCGCCTTCAGCACGGATTCTATTGGTTGCTTGACCGAGCCGCTTGTATTCGTCTTTCTGATTGGCTGAAGTGACGCACGTCCTTGCAAACGCTGTGCCGACTCTGCCAGGCGTGTGCGCTGCGGAGAAGTGAAAATGGCGAGCTGGTGTGTGAGGGCAGTGAGGCAGAGCTATTCCATTATAGGATCACCTGGGCTGCTACGGGCATCCCCAAGGCTGCTGTGCACTGCTGCTCAACAGAAGAGCAATGGGCAGCGCTCGGAGGAGGAGCCCAGTGGAGTATCCAAAGTTGAACAAAGCCCAGCCGAGAAGGCCTGGTCAGAGGAGAAGGTCCAGCTAGAGGAGCAGCTCAAAGAGATCACAGACAAGTATAAGCGTGCCCTCGCCGACACAGAAAACCTGAGGCAGAGGAGTCAGAAGATGGTCGAAGATGCTAAATTATATGGTATTCAAGGCTTCTGCAAAGACCTTCTAGAAGTGGCTGATATTTTGGAGAAAGCAACAGAAAGTGTCCCAAAAGAGGAAGTGACCCCAGGGAACCCCCATCTGAAGAACCTGTATGAAGGGCTTGTGATGACCGAGGTCCAGATGCAGAAGGTGTTCACCAAGCACGGATTAGTGAAGCTCAACCCTGCGGGGCAGAAATTTGACCCCTATGAACACGAAGCCCTGTTCCATGCCCCTGTGGAAGGCAAGGAGCCTGGCACAGTAGCCATGGTCACGAAGGTGGGGTACAAGCTCTATGGGCGCACTCTCAGGCCTGCTTTGGTAGGGGTAGCAAAAGCTCCATAACCCATCCTGTCACTGTGTATACAGTTGTGTACAGTTTATCAGGCATAAATGCTAACTGTGAAGAGTATAACAAGATGGATTCCTCAAAAGAATGTACTGACCAGGTAACTCATTTCAATGGGTCATAGTTCTAATTGGATGGAGTTTAAGCATTGGACCTCCTATGATGACattaaactgtttgttttttccatgtcCAAATCTccctaatatttttttatttaaaaatacggGGGTGGTACCGCCACAGTACTGAATGAAACCCCTCTTTATATTCATTTCCCAGACACTAAGTTATATACTTCTGGTTCAAATTGCAATTTGTTACATGCAGAATCATCCTGCCATCACAATTTTAACAGGTCTCTATATTCTCCGTTAAATTGAACATCCCTGGAAGTAGAATCTGTTCACCAAAAATAAGTAGAACTCTAGAATTTAGGTCTCATTTGTGGACTGTTTATAATGTGCTCTGTAAACGTTTAATTTACAGCTTATTTAAATGCTATTAAGTAATTTGTATAGGTTTATTGCTTGTATAATATACTtttgtaataaagtaaaaacacttTCTGTAAAATGGGAAGAAATAACCATTTTAGTTCTCATGTTAGCTGTTGGGGGAATGGGGTGGGGGTCATCAGATCATGAGATTTCAACATATACAAGCATAAAGTAAggaatacagtatttaaaaggAACCAAATTTGCTTATTTCATGTTCTAAGTAGTTACAATGCCATCAGGGCTAATCTAGAGAGAATCCAACCCTTAGGCTACATTAACATACAAGGCCAACTGTAAATGAACAATCATTAAGGGCACACGACTCGTTCTATTGCAACCTGCAAGACTTGATAAATAAAACCAAGGAAGTAATTTTGTAAATTGGTCTCTTTGGCAACAGACAGAATTTAAGCAACTAAATGCACCTTCCAGGCAGAATTAGAGTCAGGGTTGTGCTCttgctttgtatttagtttcaaGCTTCTGCTGCATGTGGTCTCTTTGCACCAAGAGTGGATGTGATGAATCAATACTGCTTCCAGGTCAGAGATGGGTCTGCACCAGCGGCTGCTTTAGGgatggttgtgggttcagtcaaTAACTAAATCTCTTTTTCCATAAGAGAATCCTTGGTTTGGAAAAAAGACTCAAAAGTAGgtggctgtttgtttgttgcattCGAATAGTGTAAGTATTGGCATTGATGTGTTAGTATTTTGACATTCCAGACACTGTCAGAAGGGATCAGGATTTTAAATGGCACGatgtttattcaaatgttttaaacccTTTGCATCCCCTGCAGTGACGTCTTCCTGACTATTATAAAGAAGTGCCTGAGTAGCACGTCTGAGAGAAACTGAAGTTGAGTACATGAGTAATAAACCCACACTGATTTGTCTTTGCTGTCTGCCTTAGGAGGATGTGTGCAACATACACTATCAGCTCTTCTGATGCAGTAAGAGGTTATTGGTATGCAGCGTTTAGACTCATTTCATTACATTGTAATATCTTCTGTTGAGGGAACATGATTAATAAAAACGGATCAGAACAaactattgatttttttttttttgtgtgtgcagaaCTGTAACCTGACATGCTGAGCTGCTAATCTATTTGAGTAGTTTCGGTATATTATTGCTTTGTTAAATAggaaagaaatattaaaaaacaaatgttacctTGTCCATACTTTTGGGAAACATTTAACTATTTTACAACAGTTTTCTTCTAAACAAACCTTTAACAATGTCAGATTAAAG

Function

symbol description
grpel1 Predicted to enable adenyl-nucleotide exchange factor activity and unfolded protein binding activity. Predicted to be involved in protein import into mitochondrial matrix. Predicted to act upstream of or within protein folding. Predicted to be located in mitochondrion. Predicted to be part of PAM complex, Tim23 associated import motor. Orthologous to human GRPEL1 (GrpE like 1, mitochondrial).

NR:

description
PREDICTED: grpE protein homolog 1, mitochondrial

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0050790 regulation of catalytic activity biological_process
GO:0005759 mitochondrial matrix cellular_component
GO:0000774 adenyl-nucleotide exchange factor activity molecular_function
GO:0042803 protein homodimerization activity molecular_function
GO:0051087 chaperone binding molecular_function

KEGG:

id description
K03687 GRPE; molecular chaperone GrpE

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017616 True 2616 mRNA 0.42 4 13549425 13553804

Neighbor

gene id symbol gene type direction distance location
AMCG00017614 NA coding downstream 7287 13540585 ~ 13542138 (-)
AMCG00017603 ppp2r2c,LOC106516650 coding downstream 245090 13285773 ~ 13304335 (-)
AMCG00017601 ppp2r2c,LOC106604865,LOC106611902 coding downstream 275592 13264231 ~ 13273833 (-)
AMCG00017607 NA coding downstream 306845 13237135 ~ 13242580 (-)
AMCG00017606 NA coding downstream 323422 13216299 ~ 13226003 (-)
AMCG00017617 LOC107738968,LOC107733469,LOC107584377,LOC107657296,LOC107665873 coding upstream 277542 13831346 ~ 13867377 (-)
AMCG00017624 NA coding upstream 357281 13911085 ~ 13970970 (-)
AMCG00017622 NA coding upstream 456110 14009914 ~ 14017592 (-)
AMCG00017623 NA coding upstream 492076 14045880 ~ 14067539 (-)
AMCG00017625 NA coding upstream 581107 14134911 ~ 14186450 (-)
G91576 NA non-coding downstream 893092 12656069 ~ 12656333 (-)
G91562 wdr1,LOC106565198 non-coding downstream 1028211 12517080 ~ 12521214 (-)
G91556 wdr1,LOC107717326,LOC106583413 non-coding downstream 1040282 12506627 ~ 12509143 (-)
G91553 NA non-coding downstream 1049478 12496291 ~ 12499947 (-)
G91539 NA non-coding downstream 1207690 12341442 ~ 12341735 (-)
G91850 NA non-coding upstream 490317 14044121 ~ 14044527 (-)
G92006 NA non-coding upstream 1246286 14800090 ~ 14800401 (-)
G92024 NA non-coding upstream 1370589 14924393 ~ 14925960 (-)
G92049 NA non-coding upstream 1500659 15054463 ~ 15054684 (-)
G92050 NA non-coding upstream 1501488 15055292 ~ 15056623 (-)
AMCG00017582 NA other downstream 1227055 12307781 ~ 12322370 (-)
AMCG00017569 NA other downstream 1648825 11877360 ~ 11900600 (-)
AMCG00017563 NA other downstream 2042605 11504024 ~ 11506820 (-)
AMCG00017556 NA other downstream 3052321 10361300 ~ 10497104 (-)
G91119 NA other downstream 4793518 8755288 ~ 8755907 (-)
AMCG00017631 NA other upstream 879354 14433158 ~ 14484818 (-)
AMCG00017638 scoc,LOC103463814,LOC103132857 other upstream 1206264 14760068 ~ 14764832 (-)
G92124 LOC101154678 other upstream 2313143 15866947 ~ 15867647 (-)
G92129 NA other upstream 2476598 16030402 ~ 16030905 (-)
AMCG00017663 NA other upstream 3833680 17387484 ~ 17395049 (-)

Expression


Co-expression Network