AMCG00017618


Basic Information

Item Value
gene id AMCG00017618
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 14068774 ~ 14084436 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017618
TCAGGTTACACCTTTGTTATACCCCATAGATTTAGCCAACATTACGTTTGACGTAGCCTAATTATTTAATACAGCGTTGTAGCGCAGGTTTCCGCacttctgcgcagatctgcagagtTCCGCGCTCCCATTGCTGGagctgcgcagaactgcgagAATCTGCACTGCAAGTACGCGACCAACGTAATAAGGAAACATCTGGGCAAATCTTTCttatttgtgtctttattttagAGTCATATGAGGTATTGTATTGTTATGTAGGATTCTGCAGTGCTTAAATAAATcagcaaacacaaatacatcatATCAATTACTAGGTGACGACTAAAGTAGGGGCCGAAGGAAAGATGAAATGCCTTGACGTCATCAGTGTGCGTTGTAGCATGGCAGCCCAGTAGAATGGCtttctgttaaaaacaaaaccatgtcaAAACTTTccgaaatacaatttaaaggcAATTGCGTTGCAGTGCCAGAGGGGTTTTGGTCTGCTATAGATGTCTGGTTAAAAAAACCTAATGTTGTGAATAAAAGACTGTGTGGATCCAAAGAGGAAGAGAGTAAAGTTGTTGAAGCTGCAGatattgaacacattttgtctgcattttGGAAAGAAGACGTTGAAGACCTGAAAGATGtaatttactatttaaataACGGTCTTGAAGGGAATAACCAACACCATACTACGAATGGGGGACTGAGTTTTGCAATAAGATCAATAATCCCAAAAGTGCATCTGACTGAAACTCACTTCAAAGAAATCACTCTGAAAGACATTTCCAGCCACCGTGTGACATTTCTGCCATTAGAAGAAAATGCAGAAGGACATTTGGTTATTAAAAAGAGCAACATTTACCAAATACAACTCCAATCAGTAAATTGTGAAGAATGgtccatttccatttccactcTAAGTTCCGAAAGCTGGTTTTCAGATGGGGTGATTTATCCCAAACTTGCATGGCTCAGCACAGAGCTGCTGCCAAAGCTGGTAAAGTGGTCCACTGAGAACACAAAGAGTGAATTTAAGAGTACTCTTTCGCTTATTCCTGTGGAAAAGTACAGCCACTTGTATcagaaactgaaggaaaaatacaaagaaatggtGAAAGTTTGGCCTGAAGTCACTGATCCTGAAAAATTTGTTTATGAGGATGTCGCCATTGCAACTTATCTATTGGTCTTGTGGGAAGAAGAACGTGCAGAGAAGGGCTTGACAGAGAAACAATCCTTTGTAGATCTGGGCTGTGGAAATGGACTTTTAGTTCATATATTAAGCAATGAAGGACATAGTGGAAGTGGCATTGAtgttagaaaaagaaagatctGGGACCTGTATGGACCACAAACCAATCTTAAGGAATGCACAATCACGCCAAGTGATAGCTTCTTATTCCCAGAAACAGACTGGTTGATTGGAAACCACTCAGATGAGTTAACGCCATGGATACCTGTTATATCTGCCAGGCATGTAATCTCGTCCTCGTATTGTAGCCGCTTCTTTGTACTGCCTTGTTGCTTCTTTGATTTTTATGGCAAGTATAACCGGCAACATTGTAAGAAGTCCCAGTACAAGGAATATATTGATTTCATAGCTGAAGTGAGCCatgtgtgtggttttgaagTGGAAGAAGACTGTCTAAGAATTCCTTCAACAAAAAGGGTGTGCCTTATTGGGAAGTCTAGAAGCTATGACTCCTCAAGGGAGGCCATGGTGGATGATCAAAGAACCCAGTATATTAAGAAAAGACAATGGAGTACAATAGCAAATGTTTCTAGCAAAAGAGAAACCTCTTCTACAGAACCAACAGGTGATAGTTCCAACACTGAACGGCATCCTCACGACAATGCCGAGGGGTTTCTTCATGAAGTGGAGAAACAAATCCCTGTCACTAGGAAGTGGGCAGAAGGATTTCAGCCCAGATCAAAGATCGAGCCGATGAGAAACTGTGCTACTCTTCCTCGCACTTTAATTGACAAAGTTGTGCTACAAGTGGCAAATGCTCTGCTGCTTTTGAAAATCGACGATAAACATACACCAAGTGATGAGAAGACCTGGAACCGGGGAGGAAGTCTATCAATTAAAGAAGTAGCAGAGCTTTTGGATAAGGAAACACTACAGAATCTGAAAAATGAATGTGGAGGCTTACAGACCCTTCTGAAAAACAGCCATCAAGTATTTAAAGTTGAAGGTGGAAGAGTACAGATGCGTGACTGGAGAGTGGAGACCATACGGAGGAAGCCCAGACTTGACCACAAGCGCAAACCTTCCGCCGAGATGCTTAAAACGCGAATGTGTTGGTTTCATACCAACCACCCAGAAGGCTGCCCATTGTCTTCGGACTCGTGTTCATTTGCACATGGACCAGAAGACCTCAGACATTTCTCCTTCAAgagtaagaaacaaaaaagtgctTAATTTCAGTGTCAAGCATTCAGATTCACATAAAGTCTGTTCAAAGCATGTTCCGGACATTGATATCAGACTATCTGGCAGCACATCAAAATTCCATAATTCCTCAGCTATTAGGTAAGTTTAAAACTGTGGATGATGAAAACTATACTAAATCCCTTGGGGTACTAATGGATGACAGATTGCCTTGAAATAGCTAAGTGTAGCATATTGTAACAAAGCCACAGGCTTTGTTGATTCTAAAACGCTTGGCAGGAGCCATGGGGGATTTAGATCTGCTGATAGCTGCATAGCAGGATTTATTAGATCAATCCTGGAACAAGCTTtactgtttgtattttgttttctggattAGAACTCCAAAACAGCAGTTGGgccaattaaaaatgttcagtgttaTAGTTCTTGGAAAATGATGCTTTAAACATCTCTTCCACATCCTCAACGACCCAGGCAAGGACTACTTAACATATTTTCCAGATCTATTGCAGTTCCAATATTTTAAAGCAGGAACAACATTCATGTTCTGCCAAGTTAACCACTTTGCATTTTCGTCCCACTAGACTATTAATCTTTACTCCCACAATGTGGCAAATGTGTTTCAAAGAATGTCAAATATATGCTACACCTGTCTATATATAATGATGCTtctgaataatacatttgttgtaatgttttatttatttgcctttttaCTTCTTTTAATTGCCATCTTTGCCTTTTCAGTTCAggtatttgtcttttaaattacatacaattttttttctcgGAAATCTGTAAATGTACTTACTTAGGTACAATACATAACTACGTTGGACTTGATTGCTGcatataacagaaataaaagtaaatcatAAATCAG

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process

KEGG:

id description
K15447 TRM44, METTL19; tRNASer (uridine44-2'-O)-methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017618 True 3281 mRNA 0.40 11 14068774 14084436

Neighbor

gene id symbol gene type direction distance location
AMCG00017619 NA coding upstream 59518 13993591 ~ 14009256 (+)
AMCG00017612 tada2b,LOC107656199,LOC107739399,LOC107653294,LOC107722428 coding upstream 520211 13542461 ~ 13548563 (+)
AMCG00017613 LOC106577489 coding upstream 550607 13501947 ~ 13518167 (+)
AMCG00017611 NA coding upstream 593963 13446501 ~ 13474811 (+)
AMCG00017609 NA coding upstream 639600 13428148 ~ 13429174 (+)
AMCG00017626 gpr78,LOC106608662,LOC105020663 coding downstream 45197 14129633 ~ 14132463 (+)
AMCG00017621 NA coding downstream 51164 14135600 ~ 14151779 (+)
AMCG00017628 NA coding downstream 383154 14467590 ~ 14473360 (+)
AMCG00017637 NA coding downstream 641540 14725976 ~ 14746229 (+)
AMCG00017636 NA coding downstream 664245 14748681 ~ 14764827 (+)
G91849 NA non-coding upstream 24246 14044084 ~ 14044528 (+)
G91740 NA non-coding upstream 155017 13858217 ~ 13913757 (+)
G91727 NA non-coding upstream 535564 13528781 ~ 13533210 (+)
G91726 NA non-coding upstream 542625 13522641 ~ 13526149 (+)
G91683 NA non-coding upstream 927896 13140662 ~ 13140878 (+)
G91931 NA non-coding downstream 433796 14518232 ~ 14539104 (+)
G92005 NA non-coding downstream 715655 14800091 ~ 14800376 (+)
G92016 NA non-coding downstream 858947 14943383 ~ 15036381 (+)
G92038 NA non-coding downstream 977861 15062297 ~ 15085398 (+)
G92039 LOC107556532,LOC102237872,LOC107674234,LOC107737080 non-coding downstream 981701 15066137 ~ 15067818 (+)
AMCG00017620 htra3,LOC106577909 other upstream 29711 14025636 ~ 14039063 (+)
AMCG00017615 sorcs2,LOC106577493,LOC107590992,LOC107656200,LOC107722411 other upstream 237955 13781266 ~ 13830819 (+)
AMCG00017600 NA other upstream 809014 13196895 ~ 13259760 (+)
G91452 cc2d2a other upstream 2188275 11879614 ~ 11880499 (+)
G91281 LOC103376870 other upstream 4485494 9519773 ~ 9583280 (+)
G92046 NA other downstream 992889 15077325 ~ 15084278 (+)
AMCG00017651 NA other downstream 1003696 15088132 ~ 15090829 (+)
AMCG00017652 NA other downstream 1008755 15093191 ~ 15106835 (+)
AMCG00017650 NA other downstream 1024986 15109422 ~ 15116031 (+)
G92123 LOC101154678 other downstream 1782595 15867031 ~ 15867634 (+)

Expression


Co-expression Network