AMCG00017619


Basic Information

Item Value
gene id AMCG00017619
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 13993591 ~ 14009256 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017619
GATGAATACATTGTGAACTGCTTTGACCAGGGCAATGCACAGGACGAGCAGCTGTGAGCGGGTCCAGGGACATGATGGTGCTCAGCGATAATGCAGATGCCCTGGTGGGGAATGGAGGCCAGATGGATGTTGGAAATATGTCATCCACAGGGAAGACACTCCTAACCACTGGACACCAGCAGGAGCCGGCAGATATGGCCATCGGTACTGGGACAGATGAAATGGACTCTGATCACCTGCAGGAGCCCAAAGCACTAATGGCAGCCTCTGCAGCATCGGAAGACACCTTTCCAACAGCGATCTTCATGAAGCTGGTGATGGTGCGACGGAAGAGCGGACATCCTGATGAGGGGCTGCAGGAAGTCCTGAGAGGAAAGCTGCGTATTCTGGAGAATGACAGTGGAGAGGTCATGGCACTGTTCAGTgaACTTTCAGTCAGGCTTCTGTCAGTCCACAGTGATGAGGGTGTAATAATGGtcactttcaaaacatttgaagagaTTTGGAAATTTTACACATATTACGACCTCGAATCCTTCTTTGCAAAGTGCACTGAAAATCAAGTCTTCGAGAGCATGTCCTCAGGCTGTGAGCTGCTGCTGGACCAGGGACACATACACATCTTTGAACCCCCGTCCAGTGGCTCTGAATGGACAGTACAGTCACTGGCCGATGGCTCAAGAGGGTCCATTTCCAAGCCAGCATTGGAGCCAGTTATCCCATTTCATCAatGGTTCCTTAAATCGTGCCCTGAAAACATCCTGATGAGCACTGGGGAAATGGTTTGTGAATTTCCGTTTCAGTTTGCTGTGGGCTCCTGCCTGGCTGTGGTGGAGTATGAAGGCTGTGGGCCAGACGAACTCAGCTTTGAACGTGGCGATTGTGTTGAAATTGTGGGTTTTCTAGTTTCGTGCTTTGAGTGGTTTGTGGGAAAGCATGCAGAAACTGGAAGGGTTGGACTGGTGAAGACAAGCCTTGTAAAGCCAAGCGAATCTGTTAACGAatcATCTGAATTTTTTCTAAAGGGGGAAGATAGATCTTTGTTTAAAGATCAGTGCATTGAAGAAGAAACCTTtcatctgattaaaaaaatttCACAAACAGACATTGGTGCCGTTTACAAGCTTGCATCTGCCTCTTCCAGTAATGAGAGCGATCCAATGAGAAAGGAGTTGCAGAGTAAAATAAGTGTGTTTCTGAGTGGAGTGAAGGAGCCTCATGTTACTCCAAGTGTAACACAGAGCGAAGAGAGACAAGCAGAGCATGGCGACTCTCAGCCCTTCAGCGAGCGCAGAGACTCCTGCTTCCCTGTGGACAGTGAAGACGAGAACAATCACAGCCCCGACAGCTTTCAGTCGCTGCTCGAGTTCCTCAACTGCAGTGAATACAAACAGGAATTCAAGGACCTCTATGACTTCTCCTTGCTGTTTCTTCACTCCATGTTCCAAGGCTTCGCAGACGACGAAGAACTGGTGTCCTATTTGGGATTGGCAAGGGAGATGGCGAGAAAGAAGAAGTCCCACTGGGCTCAGACGAGAATCTGTTTCCTCTTGGGGAAGCTGTGTGCCAAGAAGTATAAGTTCTCCCAAGCTAGGGTCTACTTCGAGGAGGCTCTGAGTGTTGCAAAAGAACAGTTCATGGATATATTCTTGTTAAAAGCTATTTACACCAACCTTGGGGCCATCTATCTAAAGCAGAAGaacaaagataaatatttgACCACTTTTGAGCGGATAGCTGCCTTTCTGATGGGAATTCCCAACTATATCTGCAGCACAGAGCAGGAGCCTGAGATCTTAAAATACATCTTGAAGAAAGCAGTCCTGGCTCAGAACAAGGTGGCCGAAGCAAGGACTTGCTTCCTGTTAGCCCGGCTCTACACAAGACTTAACCAGAGCCAGAGAGCTTTGCCTTTCATTGAGAGACTGCAAATTCTAGCCAAGGAATTCTCTTTAATAAGCAAGGAAAAACCCAGTGACTGTTATCTGGCTTTGGGTCAAGTTTATAGTGAGAAATATCTCCCACACCTATCAGTGAGCTCAATCAAGCATGCTTCCTTGCACTCTAGTGCTACCTTTATGGACTGTTTAAGAGGGATTGGCTTTGTCATAGAAAACACACCAAGGTTGTACAGTTTAGGAAAATGTGGCATATCAGTGCCTACGCAGGTTGCACCTTACCTTCGGCGAGCTCTTTCTTTTACAGTAGACAGGGAAGACCAACAACCTTGCCAGACTCTTTCCTTGTGTTTATCCCAGCTGCATCAACGTCACAGCATGTTCGACAAGGCCATTAGGTACATGCATGCTGTCATTGACAAGAAATCGTGGCCAGTCTCTTCTGAGGCGGTGAATGCTTTAATTTACCTGGCatggctttacattttaaataaccagCACCACTTCGCATTGGATATATTGACCTCCATGCTAGTGTCCTTTTCTGAAACCTGCACTGACCTTCAGAAAGGGGTGGTTTACAACATGAGTGGCATTGCTCTGAAGTACAGCAGTGACATCAAGCAGGCGGCCGAGAGTTATCAGAAAGCAATGCACACGTGCGAGTTCAAGCATAACCAGGCTATCGCACAGGCTAACTTCGGCTTCCTGTGCTTGCATACCGGCACTAGAGACCTAGCAGAGCTGAGCCTGGTGAAAGCAGTGGAGCTTTTTTCGGAGCTTGAGGATGTGACCCACGAGGTTAACTTCATAACGGTCCTGCTTGAGCTTGGCCAGTATTATGTCAGCCGGATGCAACTTGAAAAGGGGAGGATTTATTATGAATGGGCTTTTCTAATGGCGATCAAGGCAAACCTCACTGACTGCCAGCTCCAAGCCACTAGACAGCTGAGCCATTTCTACAACACGGTGTACCCTAACCAGGCCCAATGCATAATCTACAATGAGTaccagctgtctttagttcgaAAGGCAGGTGACAAGAATCAGGAAGGAGAAATACTGGAAACCATTAGCCAACTATACTTCAGTTTAGGCACTGAAAGAGCATATAGATCTGCTCTAGAGTACACCAAGAGGAGCCTTGGCATTTTCATtgatcttaaaaagaaagaaaaagaggcttaTGCATGGCTTCAGGCTGGGAAGATCTACCACATCCTGCAACAAAACGAGCTTGTGGACCTTTACATTCAGGTTGCGCAGGACTGTGGTGTAAGCACTGGAGATATGTACTTTAATTTGGAGCTGCTAGAACTTGCAGGGGATGTGTTTTTCAATGGGTCTCTGGACAGAGACAAAGCCATTCTTTTCTACAGGGACAGGGCGCTTCCGATCGCAATGAAGACGGGCAATGTGAGGGCCCAACTCAGGCTGTCCAACAAGCTGGTGGAGTTACTGATGCAGATGAAGCTCTATGGGGATGCTGTGGAACATGCACAAGCTGCATTGGCCATCAGCATCAGCCTGGGTGAGCAGCTGAACGAGAGGGTGGCGTTTCACCGACTGGCCGCTGTGTACCATTGCCTCAGACAGTACGAGTTGGCGGAGCACTACTACCTGAAAGCACTGTCCCTCTGCTCCTCCCCACTGCAATTCGATGAGGAGACTCTGTACTACGTAAAGGTGTATCAAACACTTGGGGATATGATTTTTTATGATCTAAAGGATCCCTTCGATGCTGCTGGGTATTACCACCTGGCTCTGGCAGCTGCCATGGACCTGGGCAATAAGAAATCTCAGCTGAAGCTGTGCACACGGCTGGCCACTATCTACCACAACTTCCTCATCAACAGAGagctctctcttttcttctaCCAGAAGGCCAGAGTCTTTGCTGCCGACCTGAACGTGCGCAGGATCAACCTGTCACCAGACCAGTATTACCAGAGCGTGTCCCAGTATAAAACATGTCCCTGAGAGCTGGGCCTCTCTGGAAGTGACCGTGTAAGGTAACACAGCTCTAAGCAGATGGAAAGTGTGACATAATGGAGCATGATGGGTGCATTCATTCAGTGCAGTTTGTTTGGTGTGATCTCAAAAGTACTGTGAAAAgaagcatatatttatttttaatctttataggtgcgattttttttaatgtttcagattGATGGATAGTTGTTCAGAAGGTCACTCTGCATGCTTACTGATTTATTGGATGTATTATGGTATTTTACACTGAACCGTAGATCTGTTTTGGGCAGTCATTTTACTTTATAGCGTGAATGTTTGGATTAACACAAATTCTACAGCAGACAAAAAGTATTGTATAAACCTGAACAGGCcttaatattttgtgtatcaGTTGGcattcaaacacaaatatgttCTAAGGTTGTCCAAAGTgcagatacaaaatacaaagcagagagagagagagatctcaACTGCTCATTTAATATCAAGCAACTTCATAGTTCACATGTTAAGGGTTCAGAATATATCCAAGTTCTGGGTTACGGCTTCAGTGACCTTTTGTTACATTACAGACAGTGTTGCATTTTGAACAAGGTCAAGATTAGACTATGGGAATAGtcttataataatgtaaaataatgtctgTACAGGTAAACTGCTGTTAGTAAATGAGAATAGATTGGTTCAGTAATCACATCAGCAGCAAATCGTTTGTGCCTTTGTTTACCACATTGGTCAGCACATTGAAACTGCTTATCATACCTACATTTTAGCAGACTAAACTGCAGGTGGACTGCCTTTAAACATGTATCTACCAATACAAATCAAAaggctttttaaagttttaaatgtagaagtgacattttaaaaaggtgttaATTTTCTTTTGACTCCGTGGTTAGTAAGAATCaagctacattattattattattagtattttccATGTATGTGTGGGTTGagcctaataaataaaaaatttgaGAAtgtaatatcatttttttaatcattaaatgtGCAAATATCATATTCAGAccattgaatacattttctttgtcctGTCGTGTGCAGGTCCTACCTCtgaag

Function

GO: NA

KEGG:

id description
K24313 SH3TC; SH3 domain and tetratricopeptide repeat-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017619 True 4961 mRNA 0.45 16 13993591 14009256

Neighbor

gene id symbol gene type direction distance location
AMCG00017612 tada2b,LOC107656199,LOC107739399,LOC107653294,LOC107722428 coding upstream 445028 13542461 ~ 13548563 (+)
AMCG00017613 LOC106577489 coding upstream 475424 13501947 ~ 13518167 (+)
AMCG00017611 NA coding upstream 518780 13446501 ~ 13474811 (+)
AMCG00017609 NA coding upstream 564417 13428148 ~ 13429174 (+)
AMCG00017608 NA coding upstream 571145 13419796 ~ 13422446 (+)
AMCG00017618 NA coding downstream 59518 14068774 ~ 14084436 (+)
AMCG00017626 gpr78,LOC106608662,LOC105020663 coding downstream 120377 14129633 ~ 14132463 (+)
AMCG00017621 NA coding downstream 126344 14135600 ~ 14151779 (+)
AMCG00017628 NA coding downstream 458334 14467590 ~ 14473360 (+)
AMCG00017637 NA coding downstream 716720 14725976 ~ 14746229 (+)
G91740 NA non-coding upstream 79834 13858217 ~ 13913757 (+)
G91727 NA non-coding upstream 460381 13528781 ~ 13533210 (+)
G91726 NA non-coding upstream 467442 13522641 ~ 13526149 (+)
G91683 NA non-coding upstream 852713 13140662 ~ 13140878 (+)
G91649 NA non-coding upstream 932945 13059856 ~ 13060646 (+)
G91849 NA non-coding downstream 34828 14044084 ~ 14044528 (+)
G91931 NA non-coding downstream 508976 14518232 ~ 14539104 (+)
G92005 NA non-coding downstream 790835 14800091 ~ 14800376 (+)
G92016 NA non-coding downstream 934127 14943383 ~ 15036381 (+)
G92038 NA non-coding downstream 1053041 15062297 ~ 15085398 (+)
AMCG00017615 sorcs2,LOC106577493,LOC107590992,LOC107656200,LOC107722411 other upstream 162772 13781266 ~ 13830819 (+)
AMCG00017600 NA other upstream 733831 13196895 ~ 13259760 (+)
G91452 cc2d2a other upstream 2113092 11879614 ~ 11880499 (+)
G91281 LOC103376870 other upstream 4410311 9519773 ~ 9583280 (+)
AMCG00017527 tkfc,LOC107731922,LOC107095500 other upstream 5228688 8751713 ~ 8764903 (+)
AMCG00017620 htra3,LOC106577909 other downstream 16380 14025636 ~ 14039063 (+)
G92046 NA other downstream 1068069 15077325 ~ 15084278 (+)
AMCG00017651 NA other downstream 1078876 15088132 ~ 15090829 (+)
AMCG00017652 NA other downstream 1083935 15093191 ~ 15106835 (+)
AMCG00017650 NA other downstream 1100166 15109422 ~ 15116031 (+)

Expression


Co-expression Network