AMCG00017621


Basic Information

Item Value
gene id AMCG00017621
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 14135600 ~ 14151779 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017621
GTTCCACTTCTCTTCCGTCCAGCACGTCTGCTGTAATATGATCGTTGACCGTAATACATGTAATACAGAGACTTTCTTTTTTCATGGGAAGACTGCGAACTGCAAAAAGTTTCCACTGCAATTAAAACCCAGAGTGCATTGAAGTGAGTGCCACATCACGGTGCATATGGGATACAAACGGATCAAAATGAACTCAGTTGtatttgctgtacatttgttggcTTCAGTTGTCTGGTGTGCTCCACCACGTTGTGAACCTGGAGACGCATTTCTAGgaCGATGTCGAACTCAAGTTGAAGACAAACCAAAATGCACAGGAATTTTACTGGGGTATTGTGATGATATGCCTTACTCTAAAACCCTGTTCCCCAActtgctggaaaacaaaaacagagaggaGGTGGAGGCGGGAACCGAATACCTCCTCCTCAGTGTCATTCACACGTTACTGAATGGCGAATGCACTCCTGACATTAGGATGCTGGGCTGCTCCATCATTGCCCCTCGCTGTGAGAAGGACAAGCTCATGAAACCTTGTCGAAGCACCTGCGAATCAGTCAAGAAAAACTGCATGCATGCGTTTGAAGGTATCAATATGGCCTGGCCCTACTTTCTGGACTGTGACCGGTTCTTTGTTGGCGAGGAAGAAGGGTGCTATGATCCTTTGGAAGCATTAAGAGagaAGCAAGAGGTCGCACTTGCGAGCATTTCCCCTGAAGAACCTTCAACTATCATCCAATTCACATACCACACTCATGCTCAGAtggttaacattttaaaaaagacaGCAGCGAGATGCTCAGACATTTCAAGAACGTACAGCATTGGTCGAAGCTTTGAGGGGAAAGATCTTCTCGTAATCGAGTTTTCAGATAACCCTGGGCAACATGAGTTATTGGAGCCAGAAATTAAATTAGTTGCGAACATGCATGGGAATGAGGTGCTCGGGAGGCAGCTCTTGATCTACTTAGCTCAGTATTTGTGTTCAGAGTATCAGCTGGGAAATGAGAGGATCCAGACTCTTATCAACACCACCCGAATCCACCTCTTTCCCTCAATGAACCCTGATGGATATGAGATAGCTGCTGCAGAGGTAGAGGATACCAATGAGCAGGAGCACGATGAAGGTCATAGGTATAATGGTTGGACCAGTGGGAGAGCAAATGCCCAAAACCTCGATCTCAATAGAAATTTTCCAGACCTGACATCGATTGTTTATAGCCGAAGGAGAAGCAAGGCCTACCGCACCGATCACATTCCAATTCCAGACAATTACTGGTTTGGTAAGGTTGCTCCGGAGACATATGCTGTGATGAAATGGATCAGATCTATCCCTTTTGTACTGTCTGCAAGTTTACATGGCGGAGAGTTGGTTGTTTCCTACCCTTATGATTTTTCAAGGCacccagaagaagaaaaaatgttttctccTACACCTGATGAGCAGGTGTTTAAACTGCTAGCCAGGACTTATGCAGATGCACACACCGTTATGTCTGATAACTCGACAGACAGATGTGGTGCATCCTTTGCCAATAAAGGAGGCATTGTCAACGGAGCTTTGTGGTACAGCTTTGCAGGAGGAATGTCTGACTTCAACTACCTCCACACCAACTGTTTTGAGATAACAGTGGAACTGGGCTGTGACAAATTTCCGAGCGAAGATGAGCTGTATCAGGGTTGGCAACAAAACAAGGAACCTCTCTTAACTTATATGGAAGTGGTGCATCGTGGAATAAAGGGGATAGTAAAGGATGAAACAGGTAAAGGGATCAAAGGAGCACGTATTTCAGTGAGAGGAATAAGACATGACATCACTACTGCTGAAGATGGAGACTACTGGAGACTGTTGAATTCTGGCATACATATTATTACTGCTACTGCACCCGGCTACACAAAAGTCATGAAGAAGATTAATCTACCACCAAGACTACAGAAACCTGGACGTGTAGATTTTGTACTACAAAGTATAGTCCAGGAACCAGATATGGTTGTTAATTATCCTACTCAAGACACATATGACCGGTTTGACCCTTATAATCAGTTTGAACGATATAGCCAGAGGGAAAATGGAGAGCCAGGACAGGAGGAGGACAGACAGGAAAAACCTTGGTGGTGGTCTTACTTTGTCATGTCTGGCAACATGGCACCAACCTGGCTTCTGAGGAACTATTAAGTTTCTagagcatttttgtttgttatcaTCCACAGGGTCTTCCAGCTTCTTACCAAGTAACTGCCTTACCAATGTAATTGGCAACTGAGAAACTCTGACGTTTTCAAATAAGATACACCTTAGCTTAGATCTCAAAATATCTGGCCTGCTTTCCTAATATTTTCAACTGAACTTGTTCTCTCTTCATccctaaattaatattttatgctgCCAGCATTCAAAActtgaatttaaacaaatagcTAAAATAAAGTATGCATAATATCTGAGATAGctgaaaaacatacacacagatgtatttttcttgttcagATATGagcaatattttcttttaatttgcataagctgtgttaatattattgtatatgcaACTAAAAGGAGTTTGTATTTCCTGGTCAATGTATCTATTCTGTCTCAcatgttgtttatgtttttatttgcttgtataACAATGAATTTcattacaacaaaatatttcaaaaaggcTTCTGAAAGTTGACTATGGAGAATTCTGGTCAAGAAGAAAAAGTGTGTCCCATAGTACATTGTTGAAGAATCATGCAACAATGACAAACTTTCTCAACTAAATTCCATATATTCAGTATAGATATTGTCAGATGTTGTGCTGGAACACATGTTTagaatggcaaaaaaaaaaaatatatatatatatatatataaaccaaaatataaaaatgcaaacaacaaataaaaggtACTCATACATCTCAGagaatgtacaatttaaatacatcatcACTACATCActtttaatcaaaaataaactacagataGATTCAGGACTAGGAAGACTAGACTCATGTTGTGGATATTGTCCGTAATGATTGCTGAAATAATTTGATCTCTATTTAGGAGGtaacttcatattttaatgCCAAGGAAAATGGAAGTTGTTTGCATAGCTACTCTGTCCCAAACTTTACACAAAATggttagcatttttattttgtgaatttacAGTTGTGTGCGTTGTCATGAGCCTTGCAGGCTGTTCAGATTTAGATGTAGTCTTCCCCACTCAATTTGTGCAACTTGTAAGGGTTAGTGAACACAAGtggacattaaaaataatgtagctAGGGGCAGgcctatgtttttgttttattgtttgtttgtttttttgcttctgtCAAAACTATTTGCCTGAAACCTTCAGACTAAATCCAACtgtatgatttgttttgtttgtttgttttgtttaaatgatgcACTACTATACATTAAGTAAATCAGCATCtgcaaactttattttatatacctTGTTGTTGActgactgaaaatgtttttataaaagttGCAATAAATAAGTATACCCACAGAAAAGTATTGTAACTGTTTTGTTGCCT

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004181 metallocarboxypeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K13022 CPZ; carboxypeptidase Z

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017621 True 3543 mRNA 0.39 11 14135600 14151779

Neighbor

gene id symbol gene type direction distance location
AMCG00017626 gpr78,LOC106608662,LOC105020663 coding upstream 3137 14129633 ~ 14132463 (+)
AMCG00017618 NA coding upstream 51164 14068774 ~ 14084436 (+)
AMCG00017619 NA coding upstream 126344 13993591 ~ 14009256 (+)
AMCG00017612 tada2b,LOC107656199,LOC107739399,LOC107653294,LOC107722428 coding upstream 587037 13542461 ~ 13548563 (+)
AMCG00017613 LOC106577489 coding upstream 617433 13501947 ~ 13518167 (+)
AMCG00017628 NA coding downstream 315811 14467590 ~ 14473360 (+)
AMCG00017637 NA coding downstream 574197 14725976 ~ 14746229 (+)
AMCG00017636 NA coding downstream 596902 14748681 ~ 14764827 (+)
AMCG00017640 maml3,LOC107712021,LOC107671314 coding downstream 672755 14824534 ~ 14825214 (+)
AMCG00017641 NA coding downstream 770483 14922262 ~ 14931595 (+)
G91849 NA non-coding upstream 91072 14044084 ~ 14044528 (+)
G91740 NA non-coding upstream 221843 13858217 ~ 13913757 (+)
G91727 NA non-coding upstream 602390 13528781 ~ 13533210 (+)
G91726 NA non-coding upstream 609451 13522641 ~ 13526149 (+)
G91683 NA non-coding upstream 994722 13140662 ~ 13140878 (+)
G91931 NA non-coding downstream 366453 14518232 ~ 14539104 (+)
G92005 NA non-coding downstream 648312 14800091 ~ 14800376 (+)
G92016 NA non-coding downstream 791604 14943383 ~ 15036381 (+)
G92038 NA non-coding downstream 910518 15062297 ~ 15085398 (+)
G92039 LOC107556532,LOC102237872,LOC107674234,LOC107737080 non-coding downstream 914358 15066137 ~ 15067818 (+)
AMCG00017620 htra3,LOC106577909 other upstream 96537 14025636 ~ 14039063 (+)
AMCG00017615 sorcs2,LOC106577493,LOC107590992,LOC107656200,LOC107722411 other upstream 304781 13781266 ~ 13830819 (+)
AMCG00017600 NA other upstream 875840 13196895 ~ 13259760 (+)
G91452 cc2d2a other upstream 2255101 11879614 ~ 11880499 (+)
G91281 LOC103376870 other upstream 4552320 9519773 ~ 9583280 (+)
G92046 NA other downstream 925546 15077325 ~ 15084278 (+)
AMCG00017651 NA other downstream 936353 15088132 ~ 15090829 (+)
AMCG00017652 NA other downstream 941412 15093191 ~ 15106835 (+)
AMCG00017650 NA other downstream 957643 15109422 ~ 15116031 (+)
G92123 LOC101154678 other downstream 1715252 15867031 ~ 15867634 (+)

Expression


Co-expression Network