AMCG00017623


Basic Information

Item Value
gene id AMCG00017623
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 14045880 ~ 14067539 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017623
atgagcTATACAGAAACCAAGTCTGGCCAAAATGATATTGGCCAGGATTTGCCTGATTTTCCCAGTGGACCCCTGGAGTCTTATCGAAATAAATCCTCTTTTAATTGGAAGGAGATGGTCAAATTTTTAGACGGTGaagaaatatttgcatttaagCTAAAGGTTTACAAGGCTCTTGAAAATGACCCACTGTTTGCACGTCAGCCCGGTGAAGACGTCTCTTTGGAAAGGCAACGTGAGATAAACTTTCAGCGCTGCAAACAACTATTTAAGTACAACTTTCTGACTGTCCAGGAAGTCATGGAAAACCCATTTAAGATGTCAGCTCTTAGTGAGTGCTTGGGCATGTACGACTGGTCTCTGTCTGGCAAATATTTTCTCAACACAGGGaTGTTTGGTGCGTCAGTTGCCAATTCTGGATCGACGAGACATGGAAAGTTTTTGAAAGATGCCGAGGACATGGTGATATTTGGATGCTTTGCTCTCACAGAACTGAGTCATGGCAGCAATACAAGAGCTTTGAGGACAACCGCAAAATATGACCCAAACACACAGGAATTCATTATAAATTCCCCAGACTTTGAGGCTGCTAAGTTTTGGGTTGGAAACCTTGGAAAGACAGCCACGCATGCTTTGGTTTTTGCTCAGCTTTTTACACCTGATGGACTTTGTCACGGACTTCATTCCTTTGTAGTTCAGGTTAGAGATCCAAAAACTCTTCTTCCAATGCCAGGTGTGATGGTTGGTGATATGGGCAAGAAAATTGGGCAGAATGGCCTGGACAATGGATTTGCAGTGTTTCATAATGTTAGAATTCCACGGGAAAATCTACTGAACAAAACTGGAGATGTCACCCCTGAAGGCCGTTATGTCACGCCATTCAAGGATCCAAATAAGCGGTTTGGTGCCTCGCTTGGTGCTTTATCGGGAGGCCGAGTATCCATTACTAGGATGGGAGTTCTGAACTTGAAGCTAGCCGTTTCAATAGCCATTCGCTTCTCTGCAACACGGCGCCAATTTGGGCCCAAGGATGGGGAGGAGATTCCGGTACTGGAATATCAACTACAGcaATGGCGCCTCATTCCCTATTTGGCTGCTGCAATGGCCTTGGATCATTTATCAAAATCTCTTTTTACAAACCTCATGGAGCTTCAGATTGGCCTCATGATGAAGGATACAAGTGACAGACAGgcaGAACTCGGCAGAGAGATCCACGCCTTATCCTGTGCCAGCAAGGCCCTGGCTTCATGGACGGCTCAGCATGGTATCCAGGAGTGTAGAGAAGCCTGCGGAGGACATGGCTATTTGGCCATGAATAGACTTGGTGACATCAGGAATGACAACGATCCAAACTGCACATATGAAGGAGACAATAATGTGATTCTGCAGCAAACCAGCAACTACCTACTTAGTTGGGTGAATGCAAAACATCATGACAAAGTAACCATTGAGTCTCCACTGGGATCAGTCAACTTTCTTGAGGACTTCAACACTATCCTGGGAAACCAATTTACAGCAACTACAGAGGAGCAGTGCATGGACTCAGCAGTTCCATTGGCAGCCTACAAGTGGTTAGTGTGTTTCCTGCTGAAAGAAAGTTACCACAAACTAAGTCAAGAGAAAGCATCTAGGAAAGCGGACTTTGAGGCACGAAACAACAGCCAGGTGTATTTCTGCCGCTCTTTGGCTATTGCCTACATAGAGCACACTTCGCTGCAGAGATTCCATGACTTGACACATGATTCCTCCACCCCAGACAGTCTGAAACCTGCATTGCAACGCCTCAGTGGATTGTATGGCCTGTGGACTCTCAGCAAACACTTGGCTGTTTTATATCAAGGCGGATACTTCTCCAGCAAGCAACACGCAGACCTGATTCAAAATGCTGTCCTTAGACTCTGTTCACAGcTGAAGGATGATGCTGTTTCTTTGGTGGATGTCATTGCTCCCCCTGACTTCATCCTGAACTCGCCCATTGGCAAGGCAGATGGTGAGctttATAAGAACCTTTGGGCTACAATTCTTCAGGGCAGCAAGGTGCTGGAGAGGCCATCGTGGTGGTCCGAGTTCTGCTGGGATAAACCCTCGGTGGGCAGCCTCAGGGCGAAGCTTTAG

Function

GO:

id name namespace
GO:0006635 fatty acid beta-oxidation biological_process
GO:0005777 peroxisome cellular_component
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0003995 acyl-CoA dehydrogenase activity molecular_function
GO:0003997 acyl-CoA oxidase activity molecular_function

KEGG:

id description
K00232 E1.3.3.6, ACOX1, ACOX3; acyl-CoA oxidase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017623 True 2115 mRNA 0.46 17 14045880 14067539

Neighbor

gene id symbol gene type direction distance location
AMCG00017622 NA coding downstream 28288 14009914 ~ 14017592 (-)
AMCG00017624 NA coding downstream 74910 13911085 ~ 13970970 (-)
AMCG00017617 LOC107738968,LOC107733469,LOC107584377,LOC107657296,LOC107665873 coding downstream 178503 13831346 ~ 13867377 (-)
AMCG00017616 grpel1 coding downstream 492076 13549425 ~ 13553804 (-)
AMCG00017614 NA coding downstream 503742 13540585 ~ 13542138 (-)
AMCG00017625 NA coding upstream 67372 14134911 ~ 14186450 (-)
AMCG00017627 NA coding upstream 203997 14271536 ~ 14278165 (-)
AMCG00017629 NA coding upstream 424990 14492529 ~ 14505953 (-)
AMCG00017630 NA coding upstream 440034 14507573 ~ 14523275 (-)
AMCG00017633 NA coding upstream 463257 14530796 ~ 14552257 (-)
G91850 NA non-coding downstream 1353 14044121 ~ 14044527 (-)
G91576 NA non-coding downstream 1389547 12656069 ~ 12656333 (-)
G91562 wdr1,LOC106565198 non-coding downstream 1524666 12517080 ~ 12521214 (-)
G91556 wdr1,LOC107717326,LOC106583413 non-coding downstream 1536737 12506627 ~ 12509143 (-)
G91553 NA non-coding downstream 1545933 12496291 ~ 12499947 (-)
G92006 NA non-coding upstream 732551 14800090 ~ 14800401 (-)
G92024 NA non-coding upstream 856854 14924393 ~ 14925960 (-)
G92049 NA non-coding upstream 986924 15054463 ~ 15054684 (-)
G92050 NA non-coding upstream 987753 15055292 ~ 15056623 (-)
G92051 NA non-coding upstream 989404 15056943 ~ 15057146 (-)
AMCG00017582 NA other downstream 1723510 12307781 ~ 12322370 (-)
AMCG00017569 NA other downstream 2145280 11877360 ~ 11900600 (-)
AMCG00017563 NA other downstream 2539060 11504024 ~ 11506820 (-)
AMCG00017556 NA other downstream 3548776 10361300 ~ 10497104 (-)
G91119 NA other downstream 5289973 8755288 ~ 8755907 (-)
AMCG00017631 NA other upstream 365619 14433158 ~ 14484818 (-)
AMCG00017638 scoc,LOC103463814,LOC103132857 other upstream 692529 14760068 ~ 14764832 (-)
G92124 LOC101154678 other upstream 1799408 15866947 ~ 15867647 (-)
G92129 NA other upstream 1962863 16030402 ~ 16030905 (-)
AMCG00017663 NA other upstream 3319945 17387484 ~ 17395049 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000346_01520841_01539115 ACOX3 coding CI01000346 null 1520841 ~ 1539632 (+)