AMCG00017626 (gpr78,LOC106608662,LOC105020663)


Basic Information

Item Value
gene id AMCG00017626
gene name gpr78,LOC106608662,LOC105020663
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 14129633 ~ 14132463 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017626
ATGGACTTGGCAGAAATCCTGTTGGCGTTGTGTATTGTTGTGGTAGCGGTTGTCTCTTTGTTATCCAACTTGCTGGTGTTGCTATGTTTTCTGCACAGCACCGAGATTCGCAAGCAAGTCCCCGGCGTTTTCATCATGAACTTGTCTTTCTGCAATCTGCTCATCACGGTTTTAAACATGCCATCCACATTGCTGGGGATCATAAAAAACCGCCAGCCCTTTGGAGACTGCATCTGCCATACTGTAAGCTTTCTGGAGACATTTTTGACCATCAACACGATGCTAAGCATGGCAGCATTGAGCATAGACAAGTGGATTGCGGTAGTGTTTCCCCTGAGTTACTCCAGTAAGATGAGATACAGAGACGCTGTGATCATGGTGTGCTACTCATGGCTCCATTCTCTTACCTTCTCTCTCATCTCGCTGCTCTTTTCTTGGGTTGACTATAACAACATCTATGCATCCTGCACCTTACATTTAAAGGAAGAACGAGAAAGGAGACGGTTTACTGTGTTCACCATCGTGCTCCATGCTACCAGTTTCATGCTTTCCCTACTTATATTATGCTTTACGTacttaaaagttttaaaagttgcacGGTTTCACTGCAAGAGGATAGACATTATTACCATGCAGACTCTGCTCTTGCTGGTAGATATTCACCCAAGTGTTAAACAACGTTGCCTTGTGGAACAGAAAAGGAGGAGACAGCGTGCTACTAAGAAAATCAGCATTTTTATAGGATCCTTTATTATCTGTTTCGCCCCTTACGTTATTACAAGACTGATagagctcctgccatttgtaaGGGTAAATCACCACTGGGGGATTGTAAGTAAGTGCCTCACGTATAGCAAGGCTGCATCGGACCCATTTGTTTATTCACTTTTGCGTCAGCAGTACAAGAAGGTCTTGATTAACATTGTCAACAGGCTGCTGAAGAGAGATCTGTATCCTTCATCTGGACACAACAGCTCTTTAGATACAGAAAATGACTATTGTCTCCAGAGAGTCAGCTAG

Function

symbol description
gpr78 Enables G protein-coupled receptor activity. Involved in adenylate cyclase-activating G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane.

NR:

description
PREDICTED: G-protein coupled receptor 26-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017626 True 1020 mRNA 0.44 3 14129633 14132463

Neighbor

gene id symbol gene type direction distance location
AMCG00017618 NA coding upstream 45197 14068774 ~ 14084436 (+)
AMCG00017619 NA coding upstream 120377 13993591 ~ 14009256 (+)
AMCG00017612 tada2b,LOC107656199,LOC107739399,LOC107653294,LOC107722428 coding upstream 581070 13542461 ~ 13548563 (+)
AMCG00017613 LOC106577489 coding upstream 611466 13501947 ~ 13518167 (+)
AMCG00017611 NA coding upstream 654822 13446501 ~ 13474811 (+)
AMCG00017621 NA coding downstream 3137 14135600 ~ 14151779 (+)
AMCG00017628 NA coding downstream 335127 14467590 ~ 14473360 (+)
AMCG00017637 NA coding downstream 593513 14725976 ~ 14746229 (+)
AMCG00017636 NA coding downstream 616218 14748681 ~ 14764827 (+)
AMCG00017640 maml3,LOC107712021,LOC107671314 coding downstream 692071 14824534 ~ 14825214 (+)
G91849 NA non-coding upstream 85105 14044084 ~ 14044528 (+)
G91740 NA non-coding upstream 215876 13858217 ~ 13913757 (+)
G91727 NA non-coding upstream 596423 13528781 ~ 13533210 (+)
G91726 NA non-coding upstream 603484 13522641 ~ 13526149 (+)
G91683 NA non-coding upstream 988755 13140662 ~ 13140878 (+)
G91931 NA non-coding downstream 385769 14518232 ~ 14539104 (+)
G92005 NA non-coding downstream 667628 14800091 ~ 14800376 (+)
G92016 NA non-coding downstream 810920 14943383 ~ 15036381 (+)
G92038 NA non-coding downstream 929834 15062297 ~ 15085398 (+)
G92039 LOC107556532,LOC102237872,LOC107674234,LOC107737080 non-coding downstream 933674 15066137 ~ 15067818 (+)
AMCG00017620 htra3,LOC106577909 other upstream 90570 14025636 ~ 14039063 (+)
AMCG00017615 sorcs2,LOC106577493,LOC107590992,LOC107656200,LOC107722411 other upstream 298814 13781266 ~ 13830819 (+)
AMCG00017600 NA other upstream 869873 13196895 ~ 13259760 (+)
G91452 cc2d2a other upstream 2249134 11879614 ~ 11880499 (+)
G91281 LOC103376870 other upstream 4546353 9519773 ~ 9583280 (+)
G92046 NA other downstream 944862 15077325 ~ 15084278 (+)
AMCG00017651 NA other downstream 955669 15088132 ~ 15090829 (+)
AMCG00017652 NA other downstream 960728 15093191 ~ 15106835 (+)
AMCG00017650 NA other downstream 976959 15109422 ~ 15116031 (+)
G92123 LOC101154678 other downstream 1734568 15867031 ~ 15867634 (+)

Expression


Co-expression Network