AMCG00017627


Basic Information

Item Value
gene id AMCG00017627
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 14271536 ~ 14278165 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017627
ATGCCGGACAAAGCAGCAGAAAAACAGACTTCAGCATCTGCCAGAGTGTCCTCGTTTTTTATCGAGAATTTGCTTGCATCCAGCCGGAAAGAAGAAAAGGGGGATAATGCCCGGGATCATATAGAGGAGCCTTTGCGCAGCGGAGTCGCCGTCAGCCATCGCAGCCAGGTCTGCTGCCCAGTGTCCGGCGCCGGCTTCAGGGCGCAGAGCTGTCCTCTCAGGGACTGTCCTTTGCAGTGGCAAGATCGCTCGTCAATATCGGGGAATATGAGCAAAGAAGACGTGCAATGCCGGCCCGCTTCTTTGAAATTCACCATTGATAATATCCTGAATCTCAAGCAGAGCAGCAAGGACCTGGACTCTGTCTCGCACCCTAAACGGCAGCCAGCTGCGGACTGCAAAAATGACTTGCAGTGTAGACTCGACGAGCATCAAGTGAATTGCAGACATGAAAGCGACTACAGACTTCAAGACACggACCCAGCACACACAGACTGTTACACCGCCGCTGCCGATGCTTTAAAGATCATAGAGACACGTCCCCGGGCAGAAAGCACAGACAGTGGCGACGACGGGGCGTcgcaaaataaaaccatcaagaaaagcaaaatgatGACGAAAAAGAAGACGCGCACCATCTTTTCCAAGAGACAAATCTTCCAGTTGGAGTCTACCTTTGACATGAAAAGATACCTGAGCAGCGCGGAAAGGGCTTGCCTGGCCAATTCGCTGCAGCTGACGGAGACGCAGGTGAAAATCTGGTTCCAGAACCGCAGGAATAAATTGAAAAGACAGCTGACCACCGAGCTGGAGGGGCCGAGCGCCGGAGAGCCTTTCGGGGAAGCGGGAAAGACTGCGCAGCTCCCGGCTCTCTACAAAGACAGCAGTAATATCCTGGGCAGATGCCTGCTCCCAATGCCTTTCCCCATCGTGTACCCTGGCAGCAGCACGCCTTATCTATGCTTCTCCAACGCCAGCAAATATTTCAGTCTTTTCGACGGAGATGTATGA

Function

GO:

id name namespace
GO:1900052 regulation of retinoic acid biosynthetic process biological_process
GO:0003677 DNA binding molecular_function

KEGG:

id description
K09349 NKX5, HMX; homeobox protein Nkx-5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017627 True 1011 mRNA 0.53 3 14271536 14278165

Neighbor

gene id symbol gene type direction distance location
AMCG00017625 NA coding downstream 85086 14134911 ~ 14186450 (-)
AMCG00017623 NA coding downstream 203997 14045880 ~ 14067539 (-)
AMCG00017622 NA coding downstream 253944 14009914 ~ 14017592 (-)
AMCG00017624 NA coding downstream 300566 13911085 ~ 13970970 (-)
AMCG00017617 LOC107738968,LOC107733469,LOC107584377,LOC107657296,LOC107665873 coding downstream 404159 13831346 ~ 13867377 (-)
AMCG00017629 NA coding upstream 214364 14492529 ~ 14505953 (-)
AMCG00017630 NA coding upstream 229408 14507573 ~ 14523275 (-)
AMCG00017633 NA coding upstream 252631 14530796 ~ 14552257 (-)
AMCG00017635 NA coding upstream 321118 14599283 ~ 14600616 (-)
AMCG00017634 NA coding upstream 330745 14608910 ~ 14612595 (-)
G91850 NA non-coding downstream 227009 14044121 ~ 14044527 (-)
G91576 NA non-coding downstream 1615203 12656069 ~ 12656333 (-)
G91562 wdr1,LOC106565198 non-coding downstream 1750322 12517080 ~ 12521214 (-)
G91556 wdr1,LOC107717326,LOC106583413 non-coding downstream 1762393 12506627 ~ 12509143 (-)
G91553 NA non-coding downstream 1771589 12496291 ~ 12499947 (-)
G92006 NA non-coding upstream 521925 14800090 ~ 14800401 (-)
G92024 NA non-coding upstream 646228 14924393 ~ 14925960 (-)
G92049 NA non-coding upstream 776298 15054463 ~ 15054684 (-)
G92050 NA non-coding upstream 777127 15055292 ~ 15056623 (-)
G92051 NA non-coding upstream 778778 15056943 ~ 15057146 (-)
AMCG00017582 NA other downstream 1949166 12307781 ~ 12322370 (-)
AMCG00017569 NA other downstream 2370936 11877360 ~ 11900600 (-)
AMCG00017563 NA other downstream 2764716 11504024 ~ 11506820 (-)
AMCG00017556 NA other downstream 3774432 10361300 ~ 10497104 (-)
G91119 NA other downstream 5515629 8755288 ~ 8755907 (-)
AMCG00017631 NA other upstream 154993 14433158 ~ 14484818 (-)
AMCG00017638 scoc,LOC103463814,LOC103132857 other upstream 481903 14760068 ~ 14764832 (-)
G92124 LOC101154678 other upstream 1588782 15866947 ~ 15867647 (-)
G92129 NA other upstream 1752237 16030402 ~ 16030905 (-)
AMCG00017663 NA other upstream 3109319 17387484 ~ 17395049 (-)

Expression


Co-expression Network