AMCG00017638 (scoc,LOC103463814,LOC103132857)


Basic Information

Item Value
gene id AMCG00017638
gene name scoc,LOC103463814,LOC103132857
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 14760068 ~ 14764832 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017638
ATGCGCCGCAGCGGACAGACTGTTGATCATTCGCAGGGAGACCCGCAGTGTCAGGCTGGTGCGACCCGCTGCAGACAGAGATTTACCATTTCCTCGCTTCGGAAGGTGGACAGAGGATCCGCAGCCCTGCATTCGAAAGAGGACAACGTGTATTTCACCATGAACTCCGATATGGATGGTGACACTGAGAACCAGgtggagctggaggagaagaCACGGCTCATTAATCAAGTGCTAGAGCTGCAGCACACCCTAGAAGATCTGTCTGCTCGAGTGGACGCAGTGAAAGAAGAAAACCTCAAGCTGAAGTCTGAAAACCAGGTGCTGGGACAGTATATCGAGAACCTTATGTCTGCCTCGAGCGTCTTCCAGACGACTGACACAAAAAGCAAACGAAAGTAAGGGActgcctccctcctcccctcccccgaCCACCACCGACcatgtttacatttgttaactgtcattaaaatgcacattaagCTTTGTTaaggtcttttttttgtttgtttgtctttttactgtttttatgtttcgttttgtttgtttaaaccCCTAGCTCATATCATGCACAGCATTATGTATAGGTTTGGACTTTCCAGAGGCACACGTTTTTTAGGGTCTACATTCAATCCCTTTTTCTGAACTGTTGGAGAGACGGTTTCTCCTCCAGATTGACATTTCTCTCACTGTATCGGTTAACTCTCAAATGGAAAAGACTGTTTTGAGCTGTTAGTGTCCAGGCTTGTATATACTTCAAGAATGTCTTTAAACTGGAATTTGATTGATCTCATTGCAATTGATTAGAATAGGCTTCACAACTGTGAAGGTAATTTGCTAATGCTTGATTTTAGtctaaatgtttttatgttcattATTACATTGCTATTGTGCCATCTGTGGTTGGGAGGCCACAATGTTCCTCACTGGACACCCTAGATCTGTGCAACTGTATAAAAATCAAATTAGCCTCAAGCAGAATCTGGGATATTTTCTCAAATTACACAAGTTTATTTACTTGGCAAAAAGAGCAAACCTATTTTACATCTCGCAACCCACCAAGTATAAACTATAACCCCTGTATTTGATGCCAGCATTTTACTGATGCTATATTAAGCTGTCCATTTTAGATTACGACCATGCGACTCTTACTAAAACATTATTTCCTGCCATTTTGTCTTAACATACTATCAGTTGATGTgatctatttattcatattactgTTGCAggtgaaatgttttactgcagaaatgtgtaaaagcacagaaatgttaaaaccacaatatttatttattgtgtacaGGCCTAAATGCAATGAAGTGATGTTACATCTTGTACAGTTTAGAATATTCCATACTGGGtcaaaaaatgaaacttttaGCACAATGGCAACAATGCCACTCACATACTGTACAACAGTTATTACATTTGAACTGAACCGTCATCCAGAATAGACATAAAGAAGACTGTAGGGTCAAATAGATCGATATGTTGTATTTTGATTCAGTAAATGTATTGCACATGTATGTATAGGCAAATTAATAGTAGTGTTACAACATAAATCATCTtctatgaattacattttttacttttgaggGACACTACAGCTTTTGTAGAAGAAATGGACGTTGTTGATATGGAAAAACAATGTGACCCAACATTCTTGCCCTGGGTTTGCAAAACAGTCGCTTCCATTTCAGATTGCTGGAGTTTGATTGTTAATAGGGTTTGGACTTTCCTAATGATTTACAGAGATGCCATTGACAAATTCatcataacaaaatacaaattatatgataatattcatttaaaagaagaaagtgaGGCTCCATTTTGAATTTGCAGTGCATTGTGACGATTAAGATATGATGAATAGTTAGTTATAAGGCATGAAGAGAAGCTGACAAACACCAGGTGATGGAGTGTGCCAGTCCCGATAAGGTGTCGCTAGCTTTGTGGTGCCAGTTTTACATGGAATTGAGTTGAAATGGATGGCAGAGCACTTCTGTCAAAATGCTAAACAAATCTATTCTGTACTGCTTGTTAAGCTTGGTGGGGACTAGTGATTGGTGGTTGAATTTAAAACTTTAGTTCATTAGCATGGTCAAATGAAAGTGGTGAAGACGCCAGTAACAATAGAAGAGTATCTTGCGAGATTCCTGCCTATTAAAACTGTACCGTCCCTTCATCAGAAAAGGACTCCTCCAGTGCTCTGATTATAGCCGAGAATGTCATCACTTGTTTGATTTGAAAATCATGTTAAAACGTTATCTAATAATTTCAACTCTGACCTGTAACCAGATCCTACACACCCCGAGACAATATTGCCTTGTGTGTagattgtgtacattttattactgTGTTGCCTTTGAAccgtttttgttttaataaaatacatttttgcttttgcatCAGTCA
>TU114757
GACAGACTGTTGATCATTCGCAGGGAGACCCGCAGTGTCAGGCTGGTGCGACCCGCTGCAGACAGAGATTTACCATTTCCTCGCTTCGGAAGGTGGACAGAGGATCCGCAGCCCTGCATTCGAAAGAGGACAACGTGTATTTCACCATGAACTCCGATATGGATGGTGACACTGAGAACCAGgtggagctggaggagaagaCACGGCTCATTAATCAAGTGCTAGAGCTGCAGCACACCCTAGAAGATCTGTCTGCTCGAGTGGACGCAGTGAAAGAAGAAAACCTCAAGCTGAAGTCTGAAAACCAGGTGCTGGGACAGTATATCGAGAACCTTATGTCTGCCTCGAGCGTCTTCCAGACGACTGACACAAAAAGCAAACGAAAGTAAGGGActgcctccctcctcccctcccccgaCCACCACCGACcatgtttacatttgttaactgtcattaaaatgcacattaagCTTTGTTaaggtcttttttttgtttgtttgtctttttactgtttttatgtttcgttttgtttgtttaaaccCCTAGCTCATATCATGCACAGCATTATGTATAGGTTTGGACTTTCCAGAGGCACACGTTTTTTAGGGTCTACATTCAATCCCTTTTTCTGAACTGTTGGAGAGACGGTTTCTCCTCCAGATTGACATTTCTCTCACTGTATCGGTTAACTCTCAAATGGAAAAGACTGTTTTGAGCTGTTAGTGTCCAGGCTTGTATATACTTCAAGAATGTCTTTAAACTGGAATTTGATTGATCTCATTGCAATTGATTAGAATAGGCTTCACAACTGTGAAGGTAATTTGCTAATGCTTGATTTTAGtctaaatgtttttatgttcattATTACATTGCTATTGTGCCATCTGTGGTTGGGAGGCCACAATGTTCCTCACTGGACACCCTAGATCTGTGCAACTGTATAAAAATCAAATTAGCCTCAAGCAGAATCTGGGATATTTTCTCAAATTACACAAGTTTATTTACTTGGCAAAAAGAGCAAACCTATTTTACATCTCGCAACCCACCAAGTATAAACTATAACCCCTGTATTTGATGCCAGCATTTTACTGATGCTATATTAAGCTGTCCATTTTAGATTACGACCATGCGACTCTTACTAAAACATTATTTCCTGCCATTTTGTCTTAACATACTATCAGTTGATGTgatctatttattcatattactgTTGCAggtgaaatgttttactgcagaaatgtgtaaaagcacagaaatgttaaaaccacaatatttatttattgtgtacaGGCCTAAATGCAATGAAGTGATGTTACATCTTGTACAGTTTAGAATATTCCATACTGGGtcaaaaaatgaaacttttaGCACAATGGCAACAATGCCACTCACATACTGTACAACAGTTATTACATTTGAACTGAACCGTCATCCAGAATAGACATAAAGAAGACTGTAGGGTCAAATAGATCGATATGTTGTATTTTGATTCAGTAAATGTATTGCACATGTATGTATAGGCAAATTAATAGTAGTGTTACAACATAAATCATCTtctatgaattacattttttacttttgaggGACACTACAGCTTTTGTAGAAGAAATGGACGTTGTTGATATGGAAAAACAATGTGACCCAACATTCTTGCCCTGGGTTTGCAAAACAGTCGCTTCCATTTCAGATTGCTGGAGTTTGATTGTTAATAGGGTTTGGACTTTCCTAATGATTTACAGAGATGCCATTGACAAATTCatcataacaaaatacaaattatatgataatattcatttaaaagaagaaagtgaGGCTCCATTTTGAATTTGCAGTGCATTGTGACGATTAAGATATGATGAATAGTTAGTTATAAGGCATGAAGAGAAGCTGACAAACACCAGGTGATGGAGTGTGCCAGTCCCGATAAGGTGTCGCTAGCTTTGTGGTGCCAGTTTTACATGGAATTGAGTTGAAATGGATGGCAGAGCACTTCTGTCAAAATGCTAAACAAATCTATTCTGTACTGCTTGTTAAGCTTGGTGGGGACTAGTGATTGGTGGTTGAATTTAAAACTTTAGTTCATTAGCATGGTCAAATGAAAGTGGTGAAGACGCCAGTAACAATAGAAGAGTATCTTGCGAGATTCCTGCCTATTAAAACTGTACCGTCCCTTCATCAGAAAAGGACTCCTCCAGTGCTCTGATTATAGCCGAGAATGTCATCACTTGTTTGATTTGAAAATCATGTTAAAACGTTATCTAATAATTTCAACTCTGACCTGTAACCAGATCCTACACACCCCGAGACAATATTGCCTTGTGTGTagattgtgtacattttattactgTGTTGCCTTTGAAccgtttttgttttaataaaatacatttttgct

Function

symbol description
scoc Involved in positive regulation of macroautophagy and regulation of protein complex stability. Located in Golgi apparatus and nucleoplasm. Colocalizes with endosome and trans-Golgi network.

NR:

description
PREDICTED: short coiled-coil protein isoform X4

GO: NA

KEGG:

id description
K20316 SCOC; short coiled-coil protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017638 True 2418 mRNA 0.39 4 14760068 14764832
TU114757 False 2392 lncRNA 0.39 4 14760081 14764819

Neighbor

gene id symbol gene type direction distance location
AMCG00017639 grk4 coding downstream 83993 14664881 ~ 14676075 (-)
AMCG00017632 htt coding downstream 102580 14614561 ~ 14657488 (-)
AMCG00017634 NA coding downstream 147473 14608910 ~ 14612595 (-)
AMCG00017635 NA coding downstream 159452 14599283 ~ 14600616 (-)
AMCG00017633 NA coding downstream 207811 14530796 ~ 14552257 (-)
AMCG00017646 NA coding upstream 238614 15003446 ~ 15012768 (-)
AMCG00017645 rab33b,LOC102236194,LOC106911658,LOC101473034,LOC100689790,LOC102313972 coding upstream 278838 15043670 ~ 15052663 (-)
AMCG00017647 LOC108434806,LOC107737080,LOC105908469,LOC107712022 coding upstream 298595 15063427 ~ 15074519 (-)
AMCG00017648 naa15,LOC105908469,LOC108263533,LOC108434806 coding upstream 310991 15075823 ~ 15080306 (-)
AMCG00017660 tada2b coding upstream 448665 15213497 ~ 15213745 (-)
G91850 NA non-coding downstream 715541 14044121 ~ 14044527 (-)
G91576 NA non-coding downstream 2103735 12656069 ~ 12656333 (-)
G91562 wdr1,LOC106565198 non-coding downstream 2238854 12517080 ~ 12521214 (-)
G91556 wdr1,LOC107717326,LOC106583413 non-coding downstream 2250925 12506627 ~ 12509143 (-)
G91553 NA non-coding downstream 2260121 12496291 ~ 12499947 (-)
G92006 NA non-coding upstream 35258 14800090 ~ 14800401 (-)
G92024 NA non-coding upstream 159561 14924393 ~ 14925960 (-)
G92049 NA non-coding upstream 289631 15054463 ~ 15054684 (-)
G92050 NA non-coding upstream 290460 15055292 ~ 15056623 (-)
G92051 NA non-coding upstream 292111 15056943 ~ 15057146 (-)
AMCG00017631 NA other downstream 275250 14433158 ~ 14484818 (-)
AMCG00017582 NA other downstream 2437698 12307781 ~ 12322370 (-)
AMCG00017569 NA other downstream 2859468 11877360 ~ 11900600 (-)
AMCG00017563 NA other downstream 3253248 11504024 ~ 11506820 (-)
AMCG00017556 NA other downstream 4262964 10361300 ~ 10497104 (-)
G92124 LOC101154678 other upstream 1102115 15866947 ~ 15867647 (-)
G92129 NA other upstream 1265570 16030402 ~ 16030905 (-)
AMCG00017663 NA other upstream 2622652 17387484 ~ 17395049 (-)
AMCG00017665 NA other upstream 2703773 17468605 ~ 17487497 (-)
AMCG00017675 NA other upstream 3016816 17781648 ~ 17789749 (-)

Expression


Co-expression Network