AMCG00017642 (setd7)


Basic Information

Item Value
gene id AMCG00017642
gene name setd7
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 15021731 ~ 15033505 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017642
AAACAGAGGTGCACAGCAAAGTGTGTGAGAAACACGGAGGGCATTTCTTCAGTATTACAACACACCGTCCTCCTTGGTAGGGCTGTTCACTTGCCGTTCCCAGGCTTTCAGACACCATGGACAGTGATGACGAGCACATGGAAGAAACCGTTGAAGGCCCGCTGGATGAAGATGACCAACCGCATGGCTTCTGTACCATCACCTACTCCTCGAGTGACCGTTTCGAGGGACACTTTGTTCATGGGGAGAAGAATGGCCGAGGCAAGTTCTACTTCTTTGACGGAAGCACGCTGGAGGGCTACTATGTAGACGATGCACTCCAGGGCCAGGGTGTGTACACCTATGAGGATGGGGGCGTTCTTCACGGCACCTACATGGACGGGGAGCTGAATGGCCCAGCGCATGAGTATGACGCTGATGGACGCCTCATCTTCAAGGGCCAGTACAAAGACAACAACCGCTGGGGGGTGTGCTGGATCTACTATCCTGATGGGGGCAGTGTGGTGGGGGAGGTGAACGAGGATGGAGAGATGACGGGCAACAAGGTTGCTTACGTTTACACAGATGGCAGAACCGCGCTGTATGGCAAGTTCATTGAGGGGGAGATCATAGAGGCTCGTCTGGCCACGCTCTTGTCTGAAGAAAATGGACAGCCCCACTTTGAGTTGCAGCCTGGCAgtCCAGTTTTCACTTATGACAAGTCCACCTCCTCCTGCATTGCTGTCAACGGCCTGCTGCCTGACCCCTATGAAACGCAGAGggTGTATGTTGCAGATTCTCGCATTAAAGGGGCTGGGGAAGGCTTGTTTGCTAAAATAGAAGCTGAACCCAACACTGTCATGGCGTTTTATAATGGAGTGCGCATTACACACCAAGAGGTAGACAGCAGAGACTGGTCTCTCAATGGGAACACTATCTCTCTCGATGAAGACACAGTGATAGATATCCCTGAGCCATTCAGCAACATAAAGAAGTACTGTGCATCACTGGGGCACAAAGCAAACCACTCCTTCACTCCCAACTGCAAATATGACCCGTATGTTCACCCCCGTTTCGGGGCCATCAAATGCATCCGCACTATCCGGGCTGTGGAGAGGGACGAGGAGCTCACGGTTGCCTACGGATATGATCACACCCCCTCAGGAAAGAGCGGGCCCGAGGCTCCCGACTGGTACAAGCAGGAGCTTCAGGCTTTCCAAGCCAAGAAGCCACCGCAGTGAAGAGCTTCCGGCAGCACTGCATCAGGGACTAACCACCAAGACAACCcaacaaacaacacagcaacaacCAGGAACTATGCACTACAGTTGTGTAGAAAACCGCAGAACCAGGGAATCTAACTGGCCAgaacttttgtgtctatttagCTAACATTTAGTATAGAGACCAGaattcatttaatacatttattcacCACACAATAGCATTAGCTGgacttctccttctctctccatgcATGCATAGTACATTCACAATAATATTGTACAGTGACCATTGTTGACTGCAGTGTTCTGCTAACATGAACTGCTATCATTTGAAGATTGCTTAATCCGAGTCCCTTTTTTCTAACTCTCTGATTACTTAGaaaagtttaaataatgcaGCATTGTTCTttttactatttactatatattttcaagATTCCAACCAAACCCATGTGTTGAAATAGTGTATCAAAAAGTATCTGCAACTGGTGTACACAGTACATCTAATTTTAGTAGTCAATCAGAGAGCAAATTTGGTCTTCAATGTCCAATTAAAATGGTTGTCCACAATTTGACATGTTAAACGGAATGCTCTAGCAGGGCATGCCAGGTGAATGgcttaaatattttctgtatttattgcttttgaagtaatgcatcattttgtatatttcacaAATATGTAATAGGCTAATTAGTTTCACCTATTCAAAGCAGATTTAACCTAATCTCAGTTCCTCtaaaagtaagaaaataatgttggATCCCTTTATAGTCAAGCTAATGAATCTAAAATAGATGGGCAGACGAGTGTAATGGGGTGGGGGTGTAAACGTTTG

Function

symbol description
setd7 Predicted to enable histone-lysine N-methyltransferase activity. Acts upstream of or within heart morphogenesis. Predicted to be located in chromosome and nucleus. Is expressed in heart; heart tube; lens; and somite. Orthologous to human SETD7 (SET domain containing 7, histone lysine methyltransferase).

NR:

description
PREDICTED: histone-lysine N-methyltransferase SETD7

GO:

id name namespace
GO:0034968 histone lysine methylation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0018026 peptidyl-lysine monomethylation biological_process
GO:0018027 peptidyl-lysine dimethylation biological_process
GO:0005634 nucleus cellular_component
GO:0005694 chromosome cellular_component
GO:0018024 histone-lysine N-methyltransferase activity molecular_function

KEGG:

id description
K11431 SETD7; [histone H3]-lysine4 N-methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017642 True 2044 mRNA 0.46 8 15021731 15033505

Neighbor

gene id symbol gene type direction distance location
AMCG00017649 NA coding upstream 25665 14980564 ~ 14996066 (+)
AMCG00017641 NA coding upstream 90136 14922262 ~ 14931595 (+)
AMCG00017640 maml3,LOC107712021,LOC107671314 coding upstream 196517 14824534 ~ 14825214 (+)
AMCG00017636 NA coding upstream 256904 14748681 ~ 14764827 (+)
AMCG00017637 NA coding upstream 275502 14725976 ~ 14746229 (+)
AMCG00017644 NA coding downstream 3800 15037305 ~ 15042799 (+)
AMCG00017643 NA coding downstream 19861 15053366 ~ 15062281 (+)
AMCG00017653 NA coding downstream 97918 15131423 ~ 15156693 (+)
AMCG00017655 NA coding downstream 160197 15193702 ~ 15194164 (+)
AMCG00017654 NA coding downstream 174104 15207609 ~ 15212259 (+)
G92005 NA non-coding upstream 221355 14800091 ~ 14800376 (+)
G91931 NA non-coding upstream 482627 14518232 ~ 14539104 (+)
G91849 NA non-coding upstream 977203 14044084 ~ 14044528 (+)
G91740 NA non-coding upstream 1107974 13858217 ~ 13913757 (+)
G91727 NA non-coding upstream 1488521 13528781 ~ 13533210 (+)
G92038 NA non-coding downstream 28792 15062297 ~ 15085398 (+)
G92039 LOC107556532,LOC102237872,LOC107674234,LOC107737080 non-coding downstream 32632 15066137 ~ 15067818 (+)
G92059 NA non-coding downstream 128825 15162330 ~ 15162692 (+)
G92095 NA non-coding downstream 494056 15527561 ~ 15527878 (+)
G92133 NA non-coding downstream 1133137 16166642 ~ 16182070 (+)
AMCG00017620 htra3,LOC106577909 other upstream 982668 14025636 ~ 14039063 (+)
AMCG00017615 sorcs2,LOC106577493,LOC107590992,LOC107656200,LOC107722411 other upstream 1190912 13781266 ~ 13830819 (+)
AMCG00017600 NA other upstream 1761971 13196895 ~ 13259760 (+)
G91452 cc2d2a other upstream 3141232 11879614 ~ 11880499 (+)
G91281 LOC103376870 other upstream 5438451 9519773 ~ 9583280 (+)
G92046 NA other downstream 43820 15077325 ~ 15084278 (+)
AMCG00017651 NA other downstream 54627 15088132 ~ 15090829 (+)
AMCG00017652 NA other downstream 59686 15093191 ~ 15106835 (+)
AMCG00017650 NA other downstream 75917 15109422 ~ 15116031 (+)
G92123 LOC101154678 other downstream 833526 15867031 ~ 15867634 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000000_05467113_05471297 SETD7 coding CI01000000 null 5467060 ~ 5472124 (+)