AMCG00017643


Basic Information

Item Value
gene id AMCG00017643
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 15053366 ~ 15062281 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017643
TTACCAAAGTCCTGCAGCTAGCTCACTCAACACACCAGCAAAATGGCATCAGTCAGTGGAGTGGAACTGGAACATTCCCCTCGAGGTTTAGAGCATGAGTACCTAACCCTCTTCAATGATAAGTCTGTACAGTTCATTGCAGAATTGGTCTCCACCTTTGAAGAAGACGCTGACAAGATCCTTAAACAGAGGACAGCCAGGAAAGTGCAACTGGATCTAACAGGAGATCTCCCCAGGTTCTCCAGCCTCACTGCTCACATCCGCAATGATCCCACATGGAGAGTTCTTCCTGTGccagagagactgagagacagacgCGTGGACATCGGGGACCTGGCGCCATGCAGCACGGAGCGCTTCACACAGGCCTTGAGGTCAACAGCTCAGGGGATCCAGGTTGATTTTGATGATGGAAACTGTCCTACCTTCTACAATCagattaaaggcatttttaatgtttgccaGGCAGTTCGTAATCAATTCCGCGATGTTCCACCAATTTCCAAGGCCCCAGTACTGATGCTCAGACCTCGAGCCTGGAACATGGTGGAGCACAACCTGCTGGTCAACGGCAAAGAGGTTCCCGGCCCCTTGTTTGATTTTGGATTATTAATGTTCCATAATGGAAAGCtgctgtttgaaaacaaaagtggGCCGTTTTTCTATCTATCCAAGATTGAAAGCCATCTTGAAGCAAGACTGTGGAACAACATATTCATTTGGACTGAACAAAAGCTGGGTTTGCCAGTGGGCAGTATaaaggccactgtgctcatagAGAACATCCTGGCCTCCTTTGAGATGGAGGAGATATTGTATGAGCTGCAGGAGCACTCCGCCGGCCTCAACTGCGGCATCTGGGACTATTCCGCCTCCTTTGTCAACAAGTTTGGCCATCGACCATCTTTCCTGCTGCCAGACCGAAGCAAATATGTGAACATGGAGAAGCTGCTGAAGTTACTGGAAATCAAGGCTGGAGTGGATGGATTCATGGTCTATGACCTTGAGTTAATAGAACCAATGCAAAagCTGTTCCTGGagcacacacagggacagaacCAGCTGCATGTGCTCAGGGAGGATGTCTCTGTCACACCCACAAATCTGCTCACGATGCCCGCGGGTGGTGTGACCCTCAATGGACTGAAGTATAATATTGCTGTTGGAATCCTCTTTATAGAGGCATGGCTTACAGGAAGGGGGCATTTTTTCTACAAAGGTCAGGTGGAAGACTCGGCTACTGCAGAAATCTCCCGGTCTCAGGTCTGGCAGTGGATTCGTCATCAAGTGAAATTGGAGGACGACAACAGAACAGTCACCAAGCAACTGGTGAAGAGTCTGGCACAGGAAGTCCAGAGAGAGCTGAAGGAGGGTCTCAGCAGTGATGCTGAAGCTGAACACCGGCTACACACCGCCTCTGCAATGTTCCTGGAAGTTGTACAGAAGTATGAGTTTCCAGAGTTCATCACCACTTATTTAAACCTGGACCACACTTTTCTAAACGCCACAGCTCAGTACAACAGGCACAGTACATttgtaaaacacaaactgtaatgtttaaaataaaggctCCTTAAGAAATGTGAGAAGGATGCTCTCAACCCACCTCTAGAATAGATGATTAATTAAAGTGACTCAGTTTTTGACTATTTGCATTTTGCCTAAATGGAACTAAAGAAATGGCAGTGttctaaatgcaaaaatactaattaaaaaaaaaatgtaatgtatataaaaggTATTGACAAAGATGCGTGTTGCAGTTTTCTCCCAGTGATAGAATGTGTTGGATTAAGACCAATCAAAGgcaatcaaaatatataataaaaaaaggacacaAGATTCTCTGgaaatgcacaatttccttAAGAATTCTATGAGGAAAACATAAGTTTTGCAAATGTGCAACTGTGCCACCAAGTGGACTATCTACAGACTACTGGAGCTAGTTATACATGTGCCAAATGCATTTATCTGTTCAATTTGAGAAATATCTGTGTCAGGAAACCAAAGACTGGTTTTATTTGACCATGAATCCAGATTTGAAATCTGCGACTACTTGGCAATAGTGCCCTTCAAGTGCACTTTTGCCCTGAACATAAACGCACCCCGTCTTAAAATTGGTCAGAACCAGCAAAATGAAagaatttaaaagaaagaaaaaaggtataACAAGGATTACATTAACCATACTCCAGGTTAAGGTAATGGAATCTGTACTAATGTATCCTTACTACCATGTCTTGTAATTAACTTAAACATAAATCTGCTGAACCTTTTGATAAACAGCAGACAATGTTAGTCAATTGAAATTCATCCTGCacagttaaaatacaacaatacaca

Function

GO: NA

KEGG:

id description
K01638 aceB, glcB; malate synthase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017643 True 2346 mRNA 0.44 15 15053366 15062281

Neighbor

gene id symbol gene type direction distance location
AMCG00017644 NA coding upstream 10567 15037305 ~ 15042799 (+)
AMCG00017642 setd7 coding upstream 19861 15021731 ~ 15033505 (+)
AMCG00017649 NA coding upstream 57300 14980564 ~ 14996066 (+)
AMCG00017641 NA coding upstream 121771 14922262 ~ 14931595 (+)
AMCG00017640 maml3,LOC107712021,LOC107671314 coding upstream 228152 14824534 ~ 14825214 (+)
AMCG00017653 NA coding downstream 69142 15131423 ~ 15156693 (+)
AMCG00017655 NA coding downstream 131421 15193702 ~ 15194164 (+)
AMCG00017654 NA coding downstream 145328 15207609 ~ 15212259 (+)
AMCG00017657 slc7a11,LOC107740166,LOC107593222,LOC107680987 coding downstream 537138 15599419 ~ 15605110 (+)
AMCG00017658 NA coding downstream 547702 15609983 ~ 15794447 (+)
G92016 NA non-coding upstream 16985 14943383 ~ 15036381 (+)
G92005 NA non-coding upstream 252990 14800091 ~ 14800376 (+)
G91931 NA non-coding upstream 514262 14518232 ~ 14539104 (+)
G91849 NA non-coding upstream 1008838 14044084 ~ 14044528 (+)
G91740 NA non-coding upstream 1139609 13858217 ~ 13913757 (+)
G92038 NA non-coding downstream 16 15062297 ~ 15085398 (+)
G92039 LOC107556532,LOC102237872,LOC107674234,LOC107737080 non-coding downstream 3856 15066137 ~ 15067818 (+)
G92059 NA non-coding downstream 100049 15162330 ~ 15162692 (+)
G92095 NA non-coding downstream 465280 15527561 ~ 15527878 (+)
G92133 NA non-coding downstream 1104361 16166642 ~ 16182070 (+)
AMCG00017620 htra3,LOC106577909 other upstream 1014303 14025636 ~ 14039063 (+)
AMCG00017615 sorcs2,LOC106577493,LOC107590992,LOC107656200,LOC107722411 other upstream 1222547 13781266 ~ 13830819 (+)
AMCG00017600 NA other upstream 1793606 13196895 ~ 13259760 (+)
G91452 cc2d2a other upstream 3172867 11879614 ~ 11880499 (+)
G91281 LOC103376870 other upstream 5470086 9519773 ~ 9583280 (+)
G92046 NA other downstream 15044 15077325 ~ 15084278 (+)
AMCG00017651 NA other downstream 25851 15088132 ~ 15090829 (+)
AMCG00017652 NA other downstream 30910 15093191 ~ 15106835 (+)
AMCG00017650 NA other downstream 47141 15109422 ~ 15116031 (+)
G92123 LOC101154678 other downstream 804750 15867031 ~ 15867634 (+)

Expression


Co-expression Network