AMCG00017644


Basic Information

Item Value
gene id AMCG00017644
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 15037305 ~ 15042799 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017644
CGGACGCGTCTGAGGAACTGAAACCTGAAACTGCGCTTCCCAAGGTCAGATTTTccttataatataaaatacccTAATGCCCCCGCAAAGCTCAGCCGTGTGGAGAGGCTGGGGTGAGTGCGCTTGTTGTCCAGGTGTGCGTTCAGGTGTGTGTTCAGGTGTGTGTCCAGGTGTGCGTTCAGGTGTGATCCGCTCTTCCTGCTACTCGACACGGTTTGCGGGGAACAGCGCGGCTCAGTCGCTTGTGTTTCACCTGCATCCAGGGGTGTCATCATTCCGGCAACATTGCACACATCTCCCAAATAAACGGCTGGAAGTGACTGTGTGGCTGAGCAGCAATGGAccgatacagatatttcatCTTCAATCAGAGGAGCATGGTGGTGCTGGGCATTTTGCAGATTGCCTGTGCGGGTCTGTGTGTGGTCTGTGGATTCATGGATGCAGCTTTTAGGAAAGAAACTACACTGAGCAACACCAGAGCACCTGTGTGGGCTGGAGCGGTGAATGCCATGATTGCCGTATCCGTGTTCTCGTGCTTCACCACTGTGATCATAGTGGTGTACGCCTCTCTGACCCTGAGCTACGGCGAGGATGACGATGAGCTCTTTCACCCCGAACACATGCACACCCCACACGCGAAGTTCATCCTGAGTAAGATCGTTCAGGGGGCCAATATCACGGTGCTTCTGGCTTGCTCCTGCAGCATCGTACTGTCGGTCTTGATCGCCTTCCTGGGCTGCCGTAGCCTCCCCTACTGTGCCTGCTACGACAGCATCACTGGACTGgagtctCTCGTTCCACAAGATGACCACAATCTACAGACTGAACTGGTTTGCACCTGGCGAGCAGGTGGCGATGACAGGCTTTTCAATGCCCCGGTGCAGTTCAGTGACCGCAGTGaggagcaggaagagatgtCCTCCAAACCGCCGCCTTATATCCGACTGGCCTGAGCTCCACTCACACTGAGGTGCTGCATAGAGCCTGgtttgcaatgtatttaaaaaggagTAGAGTGGAGGAACATGTATGAATTGTTACCAGAATATTTtactacatgtattttttttaccccgtttttattttgacaatgcacttcttttcatgtttttcactgcaATATTAGACAGCATTACTTTTacaacagaagacaaatctgtgGGAGCAACACTGCAGTATTTGCTTTTATCAGAAATATACTGTCAGGTCAAAAATCAGTATCCCGTCATGGAggctttttttagttttttccttgtgtgtgtgggaggggcaTCCTTCTTCTATTTCAATATCTTAGAGAATTGTGGATGTTATTAAATGTGGCAACTGAAATGTGACCCCTCCTGGCTGAATGAATATCCACTCCCTCCTGTGAGGGCTTGATGActaattgtttttcagtttgtgcTTTGGAAATCATGTGCCATGGCTGATGTGAACGGCTGGTGGGCAGTGAGGAAGTCGACCGCTGTCATCCTACCTACAGGCCAGCGGCGctctgtgagagagagtgagtcaCAGCCAACCCAATTGCTACATATCATGATTCATATACACTTTGTCCTTGCATTGCAATATGTATGTACTTTTTAATCAGAATTGTACTGATACTGGTAAAGTGCCAATTATTCTGTGTGTCCATTGGAGTTCTACTTGCTCAAAATAGTCTGTACCTATTTCCATCACTGTTACCAAACTCCAGCCTTTGCAGTTGACCTGGTGTCTACCACAAGAAGTAAATGTGCAATCCATGTGTTTCCTCTGATGGTTATTTTGactgtttttatataaacaaacttTCTGTAACTTTATtgagtaataaaatataacatgttttacatccaagttgttttgcacttttaataTTGTTACTGATGCCATTTACAAAAagaggcacttttttttttttttttttttacttaatttggggct

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0055004 atrial cardiac myofibril assembly biological_process
GO:0055014 atrial cardiac muscle cell development biological_process
GO:0005248 voltage-gated sodium channel activity molecular_function
GO:0005272 sodium channel activity molecular_function

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes
ko05410 Hypertrophic cardiomyopathy
ko05414 Dilated cardiomyopathy

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017644 True 1935 mRNA 0.46 6 15037305 15042799

Neighbor

gene id symbol gene type direction distance location
AMCG00017642 setd7 coding upstream 3800 15021731 ~ 15033505 (+)
AMCG00017649 NA coding upstream 41239 14980564 ~ 14996066 (+)
AMCG00017641 NA coding upstream 105710 14922262 ~ 14931595 (+)
AMCG00017640 maml3,LOC107712021,LOC107671314 coding upstream 212091 14824534 ~ 14825214 (+)
AMCG00017636 NA coding upstream 272478 14748681 ~ 14764827 (+)
AMCG00017643 NA coding downstream 10567 15053366 ~ 15062281 (+)
AMCG00017653 NA coding downstream 88624 15131423 ~ 15156693 (+)
AMCG00017655 NA coding downstream 150903 15193702 ~ 15194164 (+)
AMCG00017654 NA coding downstream 164810 15207609 ~ 15212259 (+)
AMCG00017657 slc7a11,LOC107740166,LOC107593222,LOC107680987 coding downstream 556620 15599419 ~ 15605110 (+)
G92016 NA non-coding upstream 924 14943383 ~ 15036381 (+)
G92005 NA non-coding upstream 236929 14800091 ~ 14800376 (+)
G91931 NA non-coding upstream 498201 14518232 ~ 14539104 (+)
G91849 NA non-coding upstream 992777 14044084 ~ 14044528 (+)
G91740 NA non-coding upstream 1123548 13858217 ~ 13913757 (+)
G92038 NA non-coding downstream 19498 15062297 ~ 15085398 (+)
G92039 LOC107556532,LOC102237872,LOC107674234,LOC107737080 non-coding downstream 23338 15066137 ~ 15067818 (+)
G92059 NA non-coding downstream 119531 15162330 ~ 15162692 (+)
G92095 NA non-coding downstream 484762 15527561 ~ 15527878 (+)
G92133 NA non-coding downstream 1123843 16166642 ~ 16182070 (+)
AMCG00017620 htra3,LOC106577909 other upstream 998242 14025636 ~ 14039063 (+)
AMCG00017615 sorcs2,LOC106577493,LOC107590992,LOC107656200,LOC107722411 other upstream 1206486 13781266 ~ 13830819 (+)
AMCG00017600 NA other upstream 1777545 13196895 ~ 13259760 (+)
G91452 cc2d2a other upstream 3156806 11879614 ~ 11880499 (+)
G91281 LOC103376870 other upstream 5454025 9519773 ~ 9583280 (+)
G92046 NA other downstream 34526 15077325 ~ 15084278 (+)
AMCG00017651 NA other downstream 45333 15088132 ~ 15090829 (+)
AMCG00017652 NA other downstream 50392 15093191 ~ 15106835 (+)
AMCG00017650 NA other downstream 66623 15109422 ~ 15116031 (+)
G92123 LOC101154678 other downstream 824232 15867031 ~ 15867634 (+)

Expression


Co-expression Network