AMCG00017651


Basic Information

Item Value
gene id AMCG00017651
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 15088132 ~ 15090829 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017651
AGGCTTTCTAATCAAGAGCCGACTGTTTCTCTGTGGGACCGCGGTTATTGAAGTCTATTGAACATACAGACCCGCGGATATAATGCCTTTAAATAGGTTATTGTTGCGGACGGCCTCAGTTAGTAAGACTGTAACCCGTTCTGCATTCACTGCAAGCAAACGTGATCGCAGCAGCCCCGACTGGCTGCGTGTGGGGCTGGCATTTGGAGGTACAGCAGCTGTCTGGGCACTGTTGTTCAAGCAACACAGTGAAGATGTGCACGAGtataaaaagagaaatggaCTGGAATGATGGACTGAAGCTAATATATTCCAATGGTTCATATTTCAACGGTGAAAAACAGGCAAGGACTGTGCTGTTTGATGTGAAGATTTGAGGAATATGCTATCGACATGTTGCTATCGGTGTTTCTGCAAATGTTGTCATGTAATTGAAGtaaagttatatttatattaaacatttactgggtgtctttgctttttctagtcttacacagaaaatgcaatagtattttaaattctattgCTTTGATTTTTTCAGATTACGATCTATTTGgtaattatgaaaaaaaggGTACTTTACTCCTTCACGGTATATATCAGTTTATGTACATGAATTATTAACTGTTTTTCTGCTGTTGAGTGTTaatttggtttcagttttttcacttttaaatcaaGAATTGAATGGTATTTGAGTTATGGGTTAAAATATTATGGTTGTACTTACAATGAATTTTTAATGGGGAGATTGAACATGTTTGTGCTCTGTAACTGTGATATAATGTTCCTATCATCATGAAAACAGTATCACAATG
>TU114822
TCCTCTCCGTGCACCAGGCTTTCTAATCAAGAGCCGACTGTTTCTCTGTGGGACCGCGGTTATTGAAGTCTATTGAACATACAGACCCGCGGATATAATGCCTTTAAATAGGTTATTGTTGCGGACGGCCTCAGTTAGTAAGACTGTAACCCGTTCTGCATTCACTGCAAGCAAACGTGATCGCAGCAGCCCCGACTGGCTGCGTGTGGGGCTGGCATTTGGAGGTACAGCAGCTGTCTGGGCACTGTTGTTCAAGCAACACAGTGAAGATGTGCACGAGtataaaaagagaaatggaCTGGAATGATGGACTGAAGCTAATATATTCCAATGGTTCATATTTCAACGGTGAAAAACAGGCAAGGACTGTGCTGTTTGATGTGAAGATTTGAGGAATATGCTATCGACATGTTGCTATCGGTGTTTCTGCAAATGTTGTCATGTAATTGAAGtaaagttatatttatattaaacattta

Function

GO: NA

KEGG:

id description
K03967 NDUFC1; NADH dehydrogenase (ubiquinone) 1 subunit C1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017651 True 818 mRNA 0.37 4 15088147 15090829
TU114822 False 479 lncRNA 0.44 4 15088132 15090475

Neighbor

gene id symbol gene type direction distance location
AMCG00017643 NA coding upstream 25851 15053366 ~ 15062281 (+)
AMCG00017644 NA coding upstream 45333 15037305 ~ 15042799 (+)
AMCG00017642 setd7 coding upstream 54627 15021731 ~ 15033505 (+)
AMCG00017649 NA coding upstream 92066 14980564 ~ 14996066 (+)
AMCG00017641 NA coding upstream 156537 14922262 ~ 14931595 (+)
AMCG00017653 NA coding downstream 40594 15131423 ~ 15156693 (+)
AMCG00017655 NA coding downstream 102873 15193702 ~ 15194164 (+)
AMCG00017654 NA coding downstream 116780 15207609 ~ 15212259 (+)
AMCG00017657 slc7a11,LOC107740166,LOC107593222,LOC107680987 coding downstream 508590 15599419 ~ 15605110 (+)
AMCG00017658 NA coding downstream 519154 15609983 ~ 15794447 (+)
G92038 NA non-coding upstream 2734 15062297 ~ 15085398 (+)
G92039 LOC107556532,LOC102237872,LOC107674234,LOC107737080 non-coding upstream 20314 15066137 ~ 15067818 (+)
G92016 NA non-coding upstream 51751 14943383 ~ 15036381 (+)
G92005 NA non-coding upstream 287756 14800091 ~ 14800376 (+)
G91931 NA non-coding upstream 549028 14518232 ~ 14539104 (+)
G92059 NA non-coding downstream 71501 15162330 ~ 15162692 (+)
G92095 NA non-coding downstream 436732 15527561 ~ 15527878 (+)
G92133 NA non-coding downstream 1075813 16166642 ~ 16182070 (+)
G92145 NA non-coding downstream 1224225 16315054 ~ 16315523 (+)
G92147 LOC102215562 non-coding downstream 1339623 16430452 ~ 16430712 (+)
G92046 NA other upstream 3854 15077325 ~ 15084278 (+)
AMCG00017620 htra3,LOC106577909 other upstream 1049069 14025636 ~ 14039063 (+)
AMCG00017615 sorcs2,LOC106577493,LOC107590992,LOC107656200,LOC107722411 other upstream 1257313 13781266 ~ 13830819 (+)
AMCG00017600 NA other upstream 1828372 13196895 ~ 13259760 (+)
G91452 cc2d2a other upstream 3207633 11879614 ~ 11880499 (+)
AMCG00017652 NA other downstream 2362 15093191 ~ 15106835 (+)
AMCG00017650 NA other downstream 18593 15109422 ~ 15116031 (+)
G92123 LOC101154678 other downstream 776202 15867031 ~ 15867634 (+)
G92130 LOC101154678 other downstream 1044196 16135025 ~ 16135316 (+)
AMCG00017668 NA other downstream 2510706 17601535 ~ 17620033 (+)

Expression


Co-expression Network