AMCG00017653


Basic Information

Item Value
gene id AMCG00017653
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 15131423 ~ 15156693 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017653
ATGCCCTCCCTCACAGCTGGCTCCAGGGGTCTGGGAGAGGCGTCTCCAGCGGGGGTCTTGCGCTTCTGCTTCACCTCGGTCACCTGCTCCTCTGTGACCATGGCAGCCAGGAACTCCAGCTTGAAGTTCATCTGGGTGTTGGCACGGCAGAAGGACAGCACACCGATGCCGTCAAAGGTGAAGTGGATGTTGCGCTGGGTGGCCCTGCGACTGAACTGCAGCTGCACGATCTCGCGCACGCAGCGCTCCACTGTGTTGCGCTCGAATGGGGTCCCCCAGCCACAGAAGGCGACGCAGGTGGTTCGAGTGAcagtggagagggagaggcgcATTTCAACGCCAACCCTCTCCAGACTTTCAGGAAATGaCATCAAAGGAATTTGGACCAGCGTGTCAAAGTTCATTCAAGACAAACTGTCTCTCAAGATGGGGGTGTATGTGCGGGGGCTGGGGACCTTTGCGTGGTCTCAGACCTGGCGACCCATCTTCCAGATAGGCGTAAGGGCTGCAAGAAAGCATGGTCTGAAGCAGCGCAAAGTGCCTGTGGCAGGGTCGTGGCGACATATTTGCCAGTGCAGTCTCTTCGATAAAGTCACGATGCCCGATGGACACACATACTTCCCAGGCCAAAGCAACAATGCCTATGTGTTCCCAGGGGTGGCTCTGGGGATGACAGCCTGCGGCATGCACAACATCTCTGATCACTTCAGCTGTGGGACTTCTCATGTCGATCAATCTGATCAGCTGCTGGCCTGA

Function

GO:

id name namespace
GO:0006108 malate metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0004471 malate dehydrogenase (decarboxylating) (NAD+) activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0051287 NAD binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017653 True 756 mRNA 0.57 6 15131423 15156693

Neighbor

gene id symbol gene type direction distance location
AMCG00017643 NA coding upstream 69142 15053366 ~ 15062281 (+)
AMCG00017644 NA coding upstream 88624 15037305 ~ 15042799 (+)
AMCG00017642 setd7 coding upstream 97918 15021731 ~ 15033505 (+)
AMCG00017649 NA coding upstream 135357 14980564 ~ 14996066 (+)
AMCG00017641 NA coding upstream 199828 14922262 ~ 14931595 (+)
AMCG00017655 NA coding downstream 37009 15193702 ~ 15194164 (+)
AMCG00017654 NA coding downstream 50916 15207609 ~ 15212259 (+)
AMCG00017657 slc7a11,LOC107740166,LOC107593222,LOC107680987 coding downstream 442726 15599419 ~ 15605110 (+)
AMCG00017658 NA coding downstream 453290 15609983 ~ 15794447 (+)
AMCG00017656 NA coding downstream 672236 15828929 ~ 15835050 (+)
G92038 NA non-coding upstream 46025 15062297 ~ 15085398 (+)
G92039 LOC107556532,LOC102237872,LOC107674234,LOC107737080 non-coding upstream 63605 15066137 ~ 15067818 (+)
G92016 NA non-coding upstream 95042 14943383 ~ 15036381 (+)
G92005 NA non-coding upstream 331047 14800091 ~ 14800376 (+)
G91931 NA non-coding upstream 592319 14518232 ~ 14539104 (+)
G92059 NA non-coding downstream 5637 15162330 ~ 15162692 (+)
G92095 NA non-coding downstream 370868 15527561 ~ 15527878 (+)
G92133 NA non-coding downstream 1009949 16166642 ~ 16182070 (+)
G92145 NA non-coding downstream 1158361 16315054 ~ 16315523 (+)
G92147 LOC102215562 non-coding downstream 1273759 16430452 ~ 16430712 (+)
AMCG00017650 NA other upstream 15392 15109422 ~ 15116031 (+)
AMCG00017652 NA other upstream 24588 15093191 ~ 15106835 (+)
AMCG00017651 NA other upstream 40594 15088132 ~ 15090829 (+)
G92046 NA other upstream 47145 15077325 ~ 15084278 (+)
AMCG00017620 htra3,LOC106577909 other upstream 1092360 14025636 ~ 14039063 (+)
G92123 LOC101154678 other downstream 710338 15867031 ~ 15867634 (+)
G92130 LOC101154678 other downstream 978332 16135025 ~ 16135316 (+)
AMCG00017668 NA other downstream 2444842 17601535 ~ 17620033 (+)
AMCG00017674 rnf103,LOC107722440 other downstream 2542230 17698923 ~ 17723950 (+)
G92538 NA other downstream 3916545 19073238 ~ 19073662 (+)

Expression


Co-expression Network