AMCG00017654


Basic Information

Item Value
gene id AMCG00017654
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 15207609 ~ 15212259 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017654
TCAACCTTTTCTCTTGCAGTGGAAGCTTCAGTGCACGGTAGCAATGTCCACTGCCCAGATAAGACTATCGAGGCGGCCGAAGCCCTGCTCCACATGGACTCTCCTACCAGCCTGAGGGGTGATCGCAGCCCAGTGGAGGTGTTTGTGCCCCCATGTGTAACGACGCCCGAGTTCATCCACGCTGCGATGAGGCCAGATGTCATCACTGAGACTGTGGTAGAGGTGTCCACTGAGGAGAACGAGCCCATGGAAGTCTGTACCATCATAGAAACTCCAGAGAATGAGCCCaccaaaaagaagaaagGTAACACCACCTATTTATGGGAATTCCTGTTGGACCTCCTCCAGGATAAGAATACCTGTCCCAGGTATATCAAGTGGACTCAGAGGGAGAAAGGTATCTTCAAGTTGGTGGATTCAAAAGCTGTATCCAAACTGTggggaaaacacaaaaacaaacccgaCATGAACTATGAGACAATGGGAAGGGCACTGAGATATTATTACCAAAGAGGTATCTTGGCAAAAGTTGAAGGGCAACGCCTTGTCTATCAGTTCAAAGAAATGCCCAAAAACATTGTTGTAATAGATGATGACAAATGTGATCCCAGTGGCGAGGAGATACTGAGCGCAGCAGCAGACAAGTCTTATGAGCGTGTCCCCCCATCCTCCGAGAACCTGCTGAGCTCAGCTGAGCTGTCGAAGACCCCTGGTATTCTGCGGGGCGGGCCAAGGACGCTGGTGCACCAGAGCCATGTCAAGGGCGGCAAAACCACGCACTCCATGTCTATGCCCCGGATAGTGAGCGTAACGTCAGCAGTGCAGCACCAAGACTCCTCGCATTCACAGCAGCAGACGCACACCACTATAATTCCCACAGCCTCGGGGCCCAGGACAGTGCGTGTGGCCATGCAGGTCCCTGTAGTGATGACAACGTCGCTTGGGCAGAAAATCTCCACCATGGCAGTCCAGTCTGCAGGCTCTCAAGTCCTCACCAACAGCAGCCCTACCACAGGCACAGCCCCCAAGGTGGTCATCCAGACCATCCCCACGATGATGCCGGCCACTGCCGAGAATGGAGACAAGATCACTGTGCAGCTTGCCAAAATCATTACCATCCCAGCCAACCAGCTCGCACAGTGCCAGCTGCACACCAAGTCAGGCCTGGCTGGGACTTCCAGCATCAATCTCATGGGAGCCCCGATGACTGTCAGAGCACTTACTCCTGTGTCGGTAGCACCAGGAACCCCTATCATGAGACTGGCCATGCCAGCACAGCACCACCACCAGCAAACCAGCCAGGCTGCCAGCCATACCCCAGCACGAGTCATCAGTGCCATCATCAAGAGGCCGGAGGTCAAGCAGGAGTGTGCAGCGCAAACTGCAATAAAGACAGATAAACAGTCACAACATGAAGTGGCAGAGAGAATGGCAGAGAGCCCCAATTCAGTGACTGTTACCATCCCTGTCACAGTCAAATCAGAAGGGACTGAATGCTGA

Function

GO:

id name namespace
GO:0003677 DNA binding molecular_function

KEGG:

id description
K09428 ELF1_2_4; E74-like factor 1/2/4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017654 True 1500 mRNA 0.53 5 15207609 15212259

Neighbor

gene id symbol gene type direction distance location
AMCG00017655 NA coding upstream 13445 15193702 ~ 15194164 (+)
AMCG00017653 NA coding upstream 50916 15131423 ~ 15156693 (+)
AMCG00017643 NA coding upstream 145328 15053366 ~ 15062281 (+)
AMCG00017644 NA coding upstream 164810 15037305 ~ 15042799 (+)
AMCG00017642 setd7 coding upstream 174104 15021731 ~ 15033505 (+)
AMCG00017657 slc7a11,LOC107740166,LOC107593222,LOC107680987 coding downstream 387160 15599419 ~ 15605110 (+)
AMCG00017658 NA coding downstream 397724 15609983 ~ 15794447 (+)
AMCG00017656 NA coding downstream 616670 15828929 ~ 15835050 (+)
AMCG00017662 NA coding downstream 2183472 17395731 ~ 17428335 (+)
AMCG00017666 pgrmc2 coding downstream 2296992 17509251 ~ 17511291 (+)
G92059 NA non-coding upstream 44917 15162330 ~ 15162692 (+)
G92038 NA non-coding upstream 122211 15062297 ~ 15085398 (+)
G92039 LOC107556532,LOC102237872,LOC107674234,LOC107737080 non-coding upstream 139791 15066137 ~ 15067818 (+)
G92016 NA non-coding upstream 171228 14943383 ~ 15036381 (+)
G92005 NA non-coding upstream 407233 14800091 ~ 14800376 (+)
G92095 NA non-coding downstream 315302 15527561 ~ 15527878 (+)
G92133 NA non-coding downstream 954383 16166642 ~ 16182070 (+)
G92145 NA non-coding downstream 1102795 16315054 ~ 16315523 (+)
G92147 LOC102215562 non-coding downstream 1218193 16430452 ~ 16430712 (+)
G92151 NA non-coding downstream 1391392 16603651 ~ 16603919 (+)
AMCG00017650 NA other upstream 91578 15109422 ~ 15116031 (+)
AMCG00017652 NA other upstream 100774 15093191 ~ 15106835 (+)
AMCG00017651 NA other upstream 116780 15088132 ~ 15090829 (+)
G92046 NA other upstream 123331 15077325 ~ 15084278 (+)
AMCG00017620 htra3,LOC106577909 other upstream 1168546 14025636 ~ 14039063 (+)
G92123 LOC101154678 other downstream 654772 15867031 ~ 15867634 (+)
G92130 LOC101154678 other downstream 922766 16135025 ~ 16135316 (+)
AMCG00017668 NA other downstream 2389276 17601535 ~ 17620033 (+)
AMCG00017674 rnf103,LOC107722440 other downstream 2486664 17698923 ~ 17723950 (+)
G92538 NA other downstream 3860979 19073238 ~ 19073662 (+)

Expression


Co-expression Network