AMCG00017660 (tada2b)


Basic Information

Item Value
gene id AMCG00017660
gene name tada2b
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 15213497 ~ 15213745 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017660
ATGGCGGCCCATGTTGGGGCCTCTCGGACACCCCAGGAGGTCATGGAGCATTACGTCAGCATGTACATCCATGGCAACCTGGGCAAGGCCTGTATCCCTGACAGCATCCCCAACCGAGTGACGGACCACACCTGTCTGAGTGGCGGGCCGCTCTCTCCCATCCTCACCACTCCACTGCCGCCCCTCAACATTTCTATagtggagcagcagcagcagctgggctacatgcatacatacatttctaaatag

Function

symbol description
tada2b Predicted to enable chromatin binding activity and transcription coactivator activity. Predicted to be involved in chromatin remodeling; positive regulation of histone acetylation; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of histone acetylation. Predicted to be part of SAGA-type complex. Predicted to be active in nucleus. Is expressed in female organism. Orthologous to human TADA2B (transcriptional adaptor 2B).

NR:

description
transcriptional adapter 2-beta

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003682 chromatin binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017660 True 249 mRNA 0.57 1 15213497 15213745

Neighbor

gene id symbol gene type direction distance location
AMCG00017648 naa15,LOC105908469,LOC108263533,LOC108434806 coding downstream 133191 15075823 ~ 15080306 (-)
AMCG00017647 LOC108434806,LOC107737080,LOC105908469,LOC107712022 coding downstream 138978 15063427 ~ 15074519 (-)
AMCG00017645 rab33b,LOC102236194,LOC106911658,LOC101473034,LOC100689790,LOC102313972 coding downstream 160834 15043670 ~ 15052663 (-)
AMCG00017646 NA coding downstream 200729 15003446 ~ 15012768 (-)
AMCG00017639 grk4 coding downstream 537422 14664881 ~ 14676075 (-)
AMCG00017659 NA coding upstream 9757 15223502 ~ 15234769 (-)
AMCG00017661 pcdh10,pcdh10a,LOC106604685,LOC104931883 coding upstream 1571923 16785668 ~ 16797841 (-)
AMCG00017664 NA coding upstream 2211666 17425411 ~ 17462601 (-)
AMCG00017670 NA coding upstream 2301138 17514883 ~ 17531328 (-)
AMCG00017671 abhd18,LOC107595739,LOC107653339 coding upstream 2344699 17558444 ~ 17575772 (-)
G92069 NA non-coding downstream 50785 15162318 ~ 15162712 (-)
G92067 NA non-coding downstream 68762 15144535 ~ 15144735 (-)
G92051 NA non-coding downstream 156351 15056943 ~ 15057146 (-)
G92050 NA non-coding downstream 156874 15055292 ~ 15056623 (-)
G92049 NA non-coding downstream 158813 15054463 ~ 15054684 (-)
G92093 NA non-coding upstream 271512 15485257 ~ 15485762 (-)
G92132 LOC104962440 non-coding upstream 921635 16135380 ~ 16135707 (-)
G92134 NA non-coding upstream 952894 16166639 ~ 16182063 (-)
G92135 NA non-coding upstream 968384 16182129 ~ 16182328 (-)
G92146 NA non-coding upstream 1101300 16315045 ~ 16315522 (-)
AMCG00017638 scoc,LOC103463814,LOC103132857 other downstream 448665 14760068 ~ 14764832 (-)
AMCG00017631 NA other downstream 728679 14433158 ~ 14484818 (-)
AMCG00017582 NA other downstream 2891127 12307781 ~ 12322370 (-)
AMCG00017569 NA other downstream 3312897 11877360 ~ 11900600 (-)
AMCG00017563 NA other downstream 3706677 11504024 ~ 11506820 (-)
G92124 LOC101154678 other upstream 653202 15866947 ~ 15867647 (-)
G92129 NA other upstream 816657 16030402 ~ 16030905 (-)
AMCG00017663 NA other upstream 2173739 17387484 ~ 17395049 (-)
AMCG00017665 NA other upstream 2254860 17468605 ~ 17487497 (-)
AMCG00017675 NA other upstream 2567903 17781648 ~ 17789749 (-)

Expression


Co-expression Network