AMCG00017661 (pcdh10,pcdh10a,LOC106604685,LOC104931883)


Basic Information

Item Value
gene id AMCG00017661
gene name pcdh10,pcdh10a,LOC106604685,LOC104931883
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 16785668 ~ 16797841 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017661
aaaaaaaaaaaaagatatagtGCAATCTGTGGGTTAGAAATAAGGTTTGCAAAACATCCATATATCCACTGAggatattttattgtttgtttccttttatttgacTTATAAGGGATATGCGCTGTTGCTGCATTACAGTGTTTTCTCTGAAGCCAAAGCTCAGACAATTCAGTATACCAAAATAACTGTTGAGGATCAAGCGACTGTATCTGTCAGCAAAGTTGAGCAGAGATGTTTCGGGTGTTATACGTGTAAAGGGGAAATGAACTGATGCGGGAAGCTTTACAGATTTCGCCTTTTTTCCGGACAGAGGTGATGGGAAATTCTCAGCCCATACAGAAGGAATAAAAATCCAAGTGCACTTCTAATTTGGAGATGATTGTGTTATTTCTCCTGCTCTGCATCGTGGATGGAGTGGTTTCCCAGATCCGCTATTCTGTGCCAGAGGAGCAGGACCATGGCACGTTTGTGGGGAATATTGCCGAGGATTTGGGCTTGGACATCACCAAACTTTCCTCTCGCAGGTTTCAGACTGTGCCCAGCTCCAGGACTCCGTACCTCGAAGTGAATTTGGAGAACGGGGTGCTTTTTGTGAATGAGAAAATCGACAGGGAACAGATCTGCAAACAGAGTGCGACCTGCCTTCTACACCTGGAGGTATTTTTAGAAAACCCTTTGGAGCTTTTCCGTGTGGAAATCGAAATAGTGGATATCAATGACAACCCCCCCAGCTTCCCCGAACCTGACATTACTGTTGAAATTTCGGAAAGTGCCACTCCTGGAACCCGCTTCCCACTGGAGAGCGCATTCGACCCCGATGTGGGCACCAATGCGCTCCGCACCTATGAAATCACCACCAACAGCTATTTTTACCTCGATGTGCAAACACAAGGTGATGGGAACAAGTTTGCAGAATTAGTATTGGAAAAGCCACTGGACAGGGAGCAGCAGGCAGTGCACAGGTACGTACTAACAGCAGTGGATGGGGGTCTGCCCCAGAGGACTGGCACGGCGCTGCTGGTGGTTAAAGTGCTAGACTCCAATGATAATGTGCCAGTCTTTGATCAGTCGGTGTATACGGTCAGCTTACCCGAAAACTCGCCAGTGGGCACTCTGGTCATTCAGTTAAATGCTACCGACATGGACGAGGGACAGAATGGGGAAATTGTCTATTCTTTTAGCAATCACATTTCTCCAAGAGTAAAGGATCTGTTTAATATCGACCCCAGAACGGGCAGGATTGAAGTGAGTGGGGAGGTCGACTTTGAGGAGAGCAGTATGTATCAAATCTACGTGCAGGCGAAAGATCTGGGACCTAACGCTGTGCCAGCCCACTGTAAAGTCCTGGTCAAGGTGCTGGATGTGAATGATAATGCCCCGGACATTAGTTTCAGCACAGTGACCGAGTCGGTGAGCGAGAAGGCTGCCCCTGGCACCGTGATCGCCCTGCTCAGCGTCACCGACAAGGACTCCGGGGAAAACGGGCAGATCCACTGCGAGATCCTGGGAGACGTCCCTTTCAAGCTCAAGTCTTCTTTTCGGAACTATTACACCATTGTTACGGATGGACCTCTGGACAGGGAAAATGCCGATTCATACACCATCACAGTGGTGGCAAAAGACAAGGGTTCCCCGTCCCAGACAGCGAGCAAGTCCATTAAAGTGCAGGTGTCAGATGAAAATGACAACTCTCCCAGATTTACGCAGCCCATTTATGATGTCTATGTGACTGAAAATAATGTACCCGGGGCTTATATTTATGCAGTAAGCGCCGTGGATCCCGACATCGGGCAAAATGCTTATATTTCTTACTCCATATTGGAGTGCGATATTCAGGGCATGTCAGTTTTTACCTATGTGTCAATCAATTCTGAAAACGGCTACCTTTACGCGCTGAGATCATTTGATTATGAGCAATTGAAAGACTTCAGCTTCATGGTTCAGGCGAAAGACTCCGGCAGCCCTGAGTTATCCACCAATGCGACAGTTAATGTGATCATAGTGGATCAAAATGACAATGCGCCTTCAGTCATTGCCCCGCTTGGCAAAAACGGCACAGCCAAAGAACATCTGCCCAGATCTGCAGAACCTGGCTATTTGGTGACCCGGATAGTGGCCATGGATGCAGATGATGGAGAAAACGCTCGTCTGTCTTATAGTATATTAAGGGGAAATGAAATGGGCATGTTTCGGATGGACTGGAGGACTGGTGAGCTGAGGACTGCCAGAAGGGTCCCCAGCAAAAGAGACCCGCATCACCCTTACGACTTGTTGATCGAGGTGAGGGACCACGGACAGCCACCTCTTTCCTCCACAGCCAGCGTGGTGGTTCTCATAGTGGACAGTATTGTGGAAGGCCACAGTGGGGATCGTGGGTCCCCCAAAACTAAAGAGACGTCCCTCGATTTGACTCTGATACTCATTATCGCCCTGGGCTCCGTGTCTTTTATCTTCCTCCTGGCGATGATAGTACTGGCCATCCGATGTCAAAAGGACAaaaaattgaacatttacaCGTGTCTGGCCAGTGACTGCTGCCTCTGCTGCAGTTCTTGCTGTAGCAGGCAGGCAAGAGCCAGGAAGAAAAAGCTTAGCAAGTCAGATATCATGCTGGTGCAGAGCTCTAATGTCACCAACACTGCCCAGGTCCCAGTAGAGGAATCCGGGAGCTTTGGTTCCCATCATCAAAACCAGAACTATTGCTACCAGGTATGTCTCACACCGGAATCGGCCAAAACTGATCTCATGTTCCTAAAGCCCTGTAGTCCTGCTAGGAGCACAGACACTGACCACAATCCCTGTGGAGCCATAGTGACAGGTTATACAGACCAGCAGCCTGACATCATATCTAACGGCAGCATATTATCAAACGAGACAAAACACCAGCGAGCTGAACTCAGTTACCTTGTTGATAGACCGCGGCGTGTTAACAGTTCTGCTTTCCAGGAAGCAGATATAGTGAGTTCTAAAGACAGTGGACATGGTGATAGTGAACAAGGAGACAGTGACCATGATGCCACCAATCGAGGTCATGCATCTGgcGCTGATCTTTTTTCAAATTGCACAGAAGAGTGCAAAGCCCTAGGGCACTCAGATCGATGCTGGATGCCCTCCTTTGTGCCATCCGATGGCCGCCAGGCTGCAGATTATCGTAGCAATCTGCATGTTCCAGGAATGGACTCTGTGCCAGACACTGAGGTATTTGAAACTCAAGAGCAAACTGGGGAGAGATCTTTCTCCACCTTTGGCAAAGAGAAGTCACATCACGGCACGCTAGAGAGGAAAGAGTTTGATGCACTTCTGTCTAGCACACGTGCGCCTTACAAACCACCTTATTTGTCGCGGAAAAGGATTTGCTAGTCCCTTTCGCGTGGACATACCTGAGACAGCATGAATTTGCACAATAGTCGACCAACAAAAGCATCAAGTTTTCAACTTCATTATCTTGGCCATCCAGTTGTACATTACCTTTGGATTATTCTGCCAAGGGGGACAGAGAAATGTGATGGCCGACACTAGGACCTTATTGCTCTCAGCAGGCCTGAGAAATGAGTTGAAAtggaactgtaaaaaaaaacttaggGGTGACACATCTCACCTCTCTAAtctgtgtgtgcctgtttaCAGCACTATGTATATCTTAAAATGTCACTGAGCCCTTTAGATGTTTATACTCACACCGAGAAGCCAATTgtacagaaaaatatttgtgcATTATAAATGCAATATCACTGTTTTAGACTtgactgttttatattatttttgtgtggtcAGGTGTTCCCAAATTTATTCCAACTTTATAAGGAAGATTgtgatcatgttttttttcactagTGGGTCAGAACGGTGTTGGCCTACAACTTAATCAGAGACATTCTGTAGTTTATATCATGTGTGCGAAGTGTTTACTGTACTATTTCAAAgcttctaaataaatataaatctatatatatatatatataaatatatatacttttctgAAAGTGTGGTATCCATGGTCAGTTTCTTATCCACCATAGAGTTTCATAAACTGACATCCAGTGCTATAGAAGGCATACCGTGATACAGGGAGTTCATTTTGGAAGGCCTTATTTTCACTCCCACCAATTTaatttttgttggttttgttttttacattttggaataTGAAAATTCATGtctataaataaaaggaagtaATAAATTAGATTTGACATCATGGTAATTCTGTGTTATTGTAACCAAAAAGAAACGGGCAattaaaaaagctaaatatcaaaggtatacatacattcaaacacacacacgtcaaTGCCAAGAGGTGattaataaacagataaatacagaatatttt

Function

symbol description
pcdh10a Predicted to enable calcium ion binding activity. Acts upstream of or within melanocyte migration. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including cardiovascular system; nervous system; neural crest; neural tube; and optic vesicle. Orthologous to human PCDH10 (protocadherin 10).
pcdh10 Predicted to enable calcium ion binding activity. Predicted to be involved in cell adhesion. Predicted to act upstream of or within homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be integral component of plasma membrane.

NR:

description
PREDICTED: protocadherin-10 isoform X1

GO:

id name namespace
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K16499 PCDHD2; protocadherin delta 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017661 True 4333 mRNA 0.45 5 16785668 16797841

Neighbor

gene id symbol gene type direction distance location
AMCG00017659 NA coding downstream 1550899 15223502 ~ 15234769 (-)
AMCG00017660 tada2b coding downstream 1571923 15213497 ~ 15213745 (-)
AMCG00017648 naa15,LOC105908469,LOC108263533,LOC108434806 coding downstream 1705362 15075823 ~ 15080306 (-)
AMCG00017647 LOC108434806,LOC107737080,LOC105908469,LOC107712022 coding downstream 1711149 15063427 ~ 15074519 (-)
AMCG00017645 rab33b,LOC102236194,LOC106911658,LOC101473034,LOC100689790,LOC102313972 coding downstream 1733005 15043670 ~ 15052663 (-)
AMCG00017664 NA coding upstream 627570 17425411 ~ 17462601 (-)
AMCG00017670 NA coding upstream 717042 17514883 ~ 17531328 (-)
AMCG00017671 abhd18,LOC107595739,LOC107653339 coding upstream 760603 17558444 ~ 17575772 (-)
AMCG00017672 NA coding upstream 791040 17588881 ~ 17599693 (-)
AMCG00017669 NA coding upstream 823061 17620902 ~ 17664785 (-)
G92156 NA non-coding downstream 29001 16756430 ~ 16756667 (-)
G92148 LOC102215562 non-coding downstream 354957 16430456 ~ 16430711 (-)
G92146 NA non-coding downstream 470146 16315045 ~ 16315522 (-)
G92135 NA non-coding downstream 603340 16182129 ~ 16182328 (-)
G92134 NA non-coding downstream 603605 16166639 ~ 16182063 (-)
G92176 NA non-coding upstream 128653 16926494 ~ 16926810 (-)
G92179 NA non-coding upstream 199379 16997220 ~ 16997504 (-)
G92183 NA non-coding upstream 363404 17161245 ~ 17161645 (-)
G92200 NA non-coding upstream 454589 17252430 ~ 17252630 (-)
G92313 NA non-coding upstream 916062 17713903 ~ 17714182 (-)
G92129 NA other downstream 754763 16030402 ~ 16030905 (-)
G92124 LOC101154678 other downstream 918021 15866947 ~ 15867647 (-)
AMCG00017638 scoc,LOC103463814,LOC103132857 other downstream 2020836 14760068 ~ 14764832 (-)
AMCG00017631 NA other downstream 2300850 14433158 ~ 14484818 (-)
AMCG00017582 NA other downstream 4463298 12307781 ~ 12322370 (-)
AMCG00017663 NA other upstream 589643 17387484 ~ 17395049 (-)
AMCG00017665 NA other upstream 670764 17468605 ~ 17487497 (-)
AMCG00017675 NA other upstream 983807 17781648 ~ 17789749 (-)
G92436 NA other upstream 1664943 18462784 ~ 18463176 (-)
G92591 nansa,LOC108416893,LOC108416857,LOC107723182 other upstream 2615146 19412987 ~ 19419356 (-)

Expression


Co-expression Network