AMCG00017663


Basic Information

Item Value
gene id AMCG00017663
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 17387484 ~ 17395049 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017663
TCCGGGGTAGGAACTATTGTACAGACAGCTGACTGAAAAGAGgactttgaagtgctttttgcAGTTTGTTACTTACTCACAGACTGAGCTAAGTATATAAATTGCACAAGAAAGAAGTTTAGCCAGATACAAACAACTCTAGCCGAATGCAGTAACTCAAGATTtgtaactaaatatattttttacaataacGGAATACACCGCACCCATTCAACTCCataagATGGAATTTGATATTAAGACCACATGGGACAGCTTGCCAGTTAATCATGATCCTGTGAAAGTGAAATTTTCTCCAGGAAGTGGTGGCATGACACTGGAGGTGTTTGCTCCATTTTTTAATGACCCCCCATCTCCAGCTAGTCCTGCCGGCCACCCCTTTCCTGGGCTGTGGGACTATGAAGTTGTTGAATCATTCTTCTTAAACAGCAAAACGGAGCAATACCTGGAGGTTGAGTTTTGTCCTCATGGACAGCACTTAGTTTTATTACTCTCAGGAAGAGGAAATGCATTTACAgAAGGCCTTAGTTTAACCTTTGAAGCCACCATTTCTGGGAACAAGTGGAAGGGGAAAGCACTTATTCCCTGGGGCTATTTTCCACCTGATGTGGATAAAATGAATTCATATGCCATTCATGGATCTGGAGATGGAAGGACTTATGAGGCCCTCTATCCAATACCGAGAGATGAGTTAACCGAGAATCAAGCACCTAACTTCCATCGTCTGGAATACTTCAAAAACTTCAGATTACAAGGAATTATGGGAGAAGACTGGATGAAGCCCGAATCACAGTTTTGGAAGTAAAAGTAATCAGCAGAAATTATAACAATGTTGcccaaattattataatgatcacAATTCTGTgaagattattaaaaatgctgtaTTGTACCAGTAATAAGATATACAATGCATTATGATTGCTATTATTCATGCATTCATGTACCAAATCctcaaaaaaaatgttttgtcaatGTAATATATCTGTTTATAATCCACTTAATCTACTTATAATTGTTAATACAGATATTTTGGGAATCATTAAGACAATTCTTAACGGGAAAAAGCAGCAATTCAAGTTCTATTATGgtggagatatatatataaatatatatacaaatttataataatatctGAAAAAGTGACTCCATCTTCCATTATTTTACTCAAAATTCATAATTCTTCTATGcaagtattttaatacaatattgtaatttCAATACTTTTCAACCAATAAATTCCTGCAAGCTTCAGCATGctgcatttgtgtgtgagtTGATGGATTCTTGAATGTTCAACAACGAATAATGGAGAAAATGcttaatgttatgttatttttaataggcTATTTACACTCCCCAATTATTCAGCAAATAATTACtcataaatgttaatttatattatacCATTGTAAAACCAGAGTAACATGTAGAGAAGCCAAAGTTAAATCATGGCAAAGCAGAGAGAGATATAGTAAACCAAGGCCAAGCAAAGTACATGCCTGGTAGGTTCTTTATtgtctgaaatgaaaacatggaGACTGTAAGCATCTGATGCACCTAACCAATGTCTGTGCATCAGACATAGTGATGTTTGACCTTGTCTCCTCTATGAAAATAACCTTCAGTGTGATAAGCCTCATGCACTAGTCATTTAACTATAACTGGTTGGATAATCTTGCCTGAAGCTTTTCAGTAACTAATCAACTGTGGTTGTAAAATCGAAGTCTCATATTTATGAGAACTGTCTTGTCTTCCAAAAATGATAATCTGAACTACTGCatcattttttaatcttatcttaatgttttagttttttccacttgggttataaaactaaattgaagGCAATATTATGTATGTTGGTGAACAGTCTTGGAAACTAATACTGACTTGAACTAGCATTAACTGACACacctatacaaaatatattaatacatcacattgTGCAGAAGTCCAACATATTTGGCCTTGTCATAGCATACTTTTGACCCAGTTGTTATCACTCAAATTGTCAAtacatttctgtgcttttcacAATTAAAGTAACTGTAATTTGGGATTTAGAACCCAAGCGTGAAACATGAGCATGAACACGTCACACTGTATGCATACATGTGTAGTAGACCGTATAAATCTGTGTGTAGTTCAATGTTGATATCACACAGTATTTGCTCAGATGTTCTTGACAACTTGAAAGCACATCTTTCAATAAACAAGGCTGAAATTTAACTTGGTCCACTTAATCCAAACCTAGATACACTGCAGTGGAAAGGGCAGGTCTTTCTGTTGTAGACTTTTTCAATGCAGCTCTGTTGCCACCTAATGGTGAAGTAGG
>TU115016
aaaatgtagttttaatattaatgcatGCTTTAGTTCTAATATCATTGTAATAGATAGAATTTAAATGCTATCtctatatttattatgatatgTTGGTTTATTTCCGGGGTAGGAACTATTGTACAGACAGCTGACTGAAAAGAGgactttgaagtgctttttgcAGTTTGTTACTTACTCACAGACTGAGCTAAGTATATAAATTGCACAAGAAAGAAGTTTAGCCAGATACAAACAACTCTAGCCGAATGCAGTAACTCAAGATTtgtaactaaatatattttttacaataacGGAATACACCGCACCCATTCAACTCCataagTTGTTGAATCATTCTTCTTAAACAGCAAAACGGAGCAATACCTGGAGGTTGAGTTTTGTCCTCATGGACAGCACTTAGTTTTATTACTCTCAGGAAGAGGAAATGCATTTACAgAAGGCCTTAGTTTAACCTTTGAAGCCACCATTTCTGGGAACAAGTGGAAGGGGAAAGCACTTATTCCCTGGGGCTATTTTCCACCTGATGTGGATAAAATGAATTCATATGCCATTCATGGATCTGGAGATGGAAGGACTTATGAGGCCCTCTATCCAATACCGAGAGATGAGTTAACCGAGAATCAAGCACCTAACTTCCATCGTCTGGAATACTTCAAAAACTTCAGATTACAAGGAATTATGGGAGAAGACTGGATGAAGCCCGAATCACAGTTTTGGAAGTAAAAGTAATCAGCAGAAATTATAACAATGTTGcccaaattattataatgatcacAATTCTGTgaagattattaaaaatgctgtaTTGTACCAGTAATAAGATATACAATGCATTATGATTGCTATTATTCATGCATTCATGTACCAAATCctcaaaaaaaatgttttgtcaatGTAATATATCTGTTTATAATCCACTTAATCTACTTATAATTGTTAATACAGATATTTTGGGAATCATTAAGACAATTCTTAACGGGAAAAAGCAGCAATTCAAGTTCTATTATGgtggagatatatatataaatatatatacaaatttataataatatctGAAAAAGTGACTCCATCTTCCATTATTTTACTCAAAATTCATAATTCTTCTATGcaagt
>TU115017
ATTTGTGCTCAATATAACTGCACGGATTTAACTGCCCACGAAATCTTAATATGACTTACAATCGTGTTAATCCGATGAACTATTGTACAGACAGCTGACTGAAAAGAGgactttgaagtgctttttgcAGTTTGTTACTTACTCACAGACTGAGCTAAGTATATAAATTGCACAAGAAAGAAGTTTAGCCAGATACAAACAACTCTAGCCGAATGCAGTAACTCAAGATTtgtaactaaatatattttttacaataacGGAATACACCGCACCCATTCAACTCCataagTTGTTGAATCATTCTTCTTAAACAGCAAAACGGAGCAATACCTGGAGGTTGAGTTTTGTCCTCATGGACAGCACTTAGTTTTATTACTCTCAGGAAGAGGAAATGCATTTACAgAAGGCCTTAGTTTAACCTTTGAAGCCACCATTTCTGGGAACAAGTGGAAGGGGAAAGCACTTATTCCCTGGGGCTATTTTCCACCTGATGTGGATAAAATGAATTCATATGCCATTCATGGATCTGGAGATGGAAGGACTTATGAGGCCCTCTATCCAATACCGAGAGATGAGTTAACCGAGAATCAAGCACCTAACTTCCATCGTCTGGAATACTTCAAAAACTTCAGATTACAAGGAATTATGGGAGAAGACTGGATGAAGCCCGAATCACAGTTTTGGAAGTAAAAGTAATCAGCAGAAATTATAACAATGTTGcccaaattattataatgatcacAATTCTGTgaagattattaaaaatgctgtaTTGTACCAGTAATAAGATATACAATGCATTATGATTGCTATTATTCATGCATTCATGTACCAAATCctcaaaaaaaatgttttgtcaatGTAATATATCTGTTTATAATCCACTTAATCTACTTATAATTGTTAATACAGATATTTTGGGAATCATTAAGACAATTCTTAACGGGAAAAAGCAGCAATTCAAGTTCTATTATGgtggagatatatatataaatatatatacaaatttataataatatctGAAAAAGTGACTCCATCTTCCATTATTTTACTCAAAATTCATAATTCTTCTATGcaagt

Function

GO: NA

KEGG:

id description
ko04614 Renin-angiotensin system
ko04976 Bile secretion
ko04974 Protein digestion and absorption
ko04975 Fat digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017663 True 2338 mRNA 0.35 6 17387484 17394619
TU115016 False 1116 lncRNA 0.33 5 17388627 17394721
TU115017 False 1080 lncRNA 0.34 6 17388627 17395049

Neighbor

gene id symbol gene type direction distance location
AMCG00017661 pcdh10,pcdh10a,LOC106604685,LOC104931883 coding downstream 589643 16785668 ~ 16797841 (-)
AMCG00017659 NA coding downstream 2152715 15223502 ~ 15234769 (-)
AMCG00017660 tada2b coding downstream 2173739 15213497 ~ 15213745 (-)
AMCG00017648 naa15,LOC105908469,LOC108263533,LOC108434806 coding downstream 2307178 15075823 ~ 15080306 (-)
AMCG00017647 LOC108434806,LOC107737080,LOC105908469,LOC107712022 coding downstream 2312965 15063427 ~ 15074519 (-)
AMCG00017664 NA coding upstream 30362 17425411 ~ 17462601 (-)
AMCG00017670 NA coding upstream 119834 17514883 ~ 17531328 (-)
AMCG00017671 abhd18,LOC107595739,LOC107653339 coding upstream 163395 17558444 ~ 17575772 (-)
AMCG00017672 NA coding upstream 193832 17588881 ~ 17599693 (-)
AMCG00017669 NA coding upstream 225853 17620902 ~ 17664785 (-)
G92200 NA non-coding downstream 134854 17252430 ~ 17252630 (-)
G92183 NA non-coding downstream 225839 17161245 ~ 17161645 (-)
G92179 NA non-coding downstream 389980 16997220 ~ 16997504 (-)
G92176 NA non-coding downstream 460674 16926494 ~ 16926810 (-)
G92156 NA non-coding downstream 630817 16756430 ~ 16756667 (-)
G92313 NA non-coding upstream 318854 17713903 ~ 17714182 (-)
G92375 NA non-coding upstream 458878 17853927 ~ 17855416 (-)
G92386 NA non-coding upstream 495293 17890342 ~ 17891070 (-)
G92401 NA non-coding upstream 709940 18104989 ~ 18105268 (-)
G92428 NA non-coding upstream 992756 18387805 ~ 18452812 (-)
G92129 NA other downstream 1356579 16030402 ~ 16030905 (-)
G92124 LOC101154678 other downstream 1519837 15866947 ~ 15867647 (-)
AMCG00017638 scoc,LOC103463814,LOC103132857 other downstream 2622652 14760068 ~ 14764832 (-)
AMCG00017631 NA other downstream 2902666 14433158 ~ 14484818 (-)
AMCG00017582 NA other downstream 5065114 12307781 ~ 12322370 (-)
AMCG00017665 NA other upstream 73556 17468605 ~ 17487497 (-)
AMCG00017675 NA other upstream 386599 17781648 ~ 17789749 (-)
G92436 NA other upstream 1067735 18462784 ~ 18463176 (-)
G92591 nansa,LOC108416893,LOC108416857,LOC107723182 other upstream 2017938 19412987 ~ 19419356 (-)
AMCG00017725 NA other upstream 2906951 20302000 ~ 20358625 (-)

Expression


Co-expression Network