AMCG00017664


Basic Information

Item Value
gene id AMCG00017664
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 17425411 ~ 17462601 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017664
CGAAAACTTTGGAGGACCCGCGAAAGGGTTAATACACCCCACCATAAACGGACACAAGTTACTGTACATTTGCTAGTTTAAGGATGAGGATAAAAGTGCTCCCTCCTGTGGCTGCACTGACCCAGAAATGAGTTTGATTCACAGAGTCCTTCCTCCATAACAAGTCGTCAgtcacagtgtttgtgtgtgtgaaggagaGCTACAATCTGCGGCTGCATGAACTCATAAACTAGCACCATTTCTCCCGTAGAAACACCGCCGCCACGGCCAGCCATTGCTGTAGTTTACACGGCACCTCCTTTTAACTTCTGGACTGAAGACCATGAAACGCACCCGGCTTCCCAGCAGCAGTGAGGATTCTGACAACGGAAgtCATTCTACCTCCTGGTCACAGCATTCCAAATCTCAGCACAGAAGCAACTCGTGGTCCAGAAATGAAGACCGAAAACCATCTGAGGTATTCAGAACAGACTTGATCACAGCGATGAAGCTTCATGATTCCAACCAGCTAAACCCAGAAGACTACTACATCCTGGCTGACCCCTGGAGGCAGGATTGGGAGAAAGGAGTCCAGGTTCCTGTTAGCCCGGAGTCCATTCCATGTCCAGTAGTCAGAAGTGTGGCTGAGAAGGAAAAGGTGATCATCTTTACCAGGCCGAAGAAGTTCATTCGCTCGTCCGGCTCGGAGCCCCCGGAGCTGGGCTATGTGGACACGCGCACCCTGGCAGAGGGGACATGTATGCAAGGGATTGATGAGCTCACGATGGAGAGGGTTATGGAAGAATTCGAGCTCCGCTGCTATGACAACATGAACCACGCCATCGAAACGGAGGAGGGGTTGGGGATCGAGTACGACGAGGACGTTGTCTGCGATGTGTGCCAGTCTCCGGACGGGGAAGACGGGAACGAGATGGTCTTCTGTGACAAATGCAACATCTGTGTTCACCAGGCGTGCTATGGTATCCTGAAAGTGCCAGAGGGGAGCTGGCTGTGCCGGACCTGTGCCCTGGGAGTCCTGCCAAAATGTTTGCTCTGCCCCAAGAAAGGTGGTGCCATGAAACCCACACGCAGCGGCACAAAGTGGGTCCATGTCAGCTGTGCCCTTTGGATACCTGAGGTGAGCATTGGGAATCCAGAGAAGATGGAGCCAATCACAAACGTCTCTCACATCCCCAGCAGCAGATGGGCTTTATTATGTCGCTTGTGCAAGGAGAAGACTGGGGCATGTATACAGtGCTTGGCAAAGAACTGTCGAACGGCCTTCCACGTCACCTGTGCGTTCCAGCGCAGCTTGGAAATGAAGACCATCCTGACGGAGAACGACGAGGTGAAGTTTAGGTCCTTCTGCCTGAAACACAGCAGCCGGGAAGGCGGGGGCAGGGCGGATGGCGAGGAGGGCTcgggcgaggaggaggaggaagaggaggaggaggaggaggaggatgaagaagGGGGTTTGCTGGTGGAGGAGCAGAAGAGTAAAGCGTCCTTGGCAGAGAGGCCCCAATCCCGCTGCCTAGAGCCGGCAGTTCTGACCTCCAACCAGCAGGAGGCACAGATGGTGAACCTCCGCAAGCAGAagctgcagcagctggaggaCGAGTTCTTCAAGTTTGTCACGGCCGCCGAGGTGGCGCAGTACCTCCGCCTTCCAGAGGAGATGGTGGACTTCATGTACCAGTACTGGAAGCTGAAGAGGAAGGGCAACTTCAACAAGCCCCTGATCACCCCCAAGCAGGACGAGGAAGACAACTTGGCCAAGCGGGAGCAGGACGTTCTCTTCAGGAGACTGCAGCTTTTCACACACCTGCGCCAGGACCTGGAGAGGGTTCGCAACCTGACATACATGGTGACGCGGAGAGAGAAGATGAAGCGCTCCGTGTGCCGCGTGCAGGAGCAGATCCTCCACCACCATGTGAGActgctggaggaggagcagcTCTCTGGGGTTCCATCCTCAGTCCGTTTGGAAGATGCGCTGTTCTTTGGCTGGATGACTTCAGATGTGTCCCAACCGGAGCTCCTGAAATGCCATTTTGGTCAGTCTGTAGGACACGGCACGGGGAAGCCCTGCCTGGGGAAGGGACCCCACAGGCAGCAGAGAAGGAGAGCCTCCAGGGATGGCCACAAGAGTGGACCACTGAAGACGTCCGATGGTGCGAATGACAGCGGCAGCCAGGCTGACAACAATAGCGACAGCGGGGGCCTCGTCAAAAAGTGTGTGGAGGGCCTTCAGGACAGCGAGAGGCTGAGACCTGCGTCCAAGTTGCCACACCTCAGGGAAAAGAGGAATGGTGTGGTTGTAACGGATTACAAACGAAGAGAAAACGGCCACCGGAGCGAGGAAAACCAGCATGAGCTGAGAGAGCGCGTCTCCTCCAAGCCTGGGCATAAGCCCCTCCGGCCCAAAGAGGAGCTGACGCTGAAACAGACGGAGAACAAGAGAGCTTTGCCTCCGCCGTCCCCAACGCAGCCCAGCGCCAGAGCTCCTGCACGCAGACCCTCCGGGGATGCAGTGCCTAAATGCAATGGCTCACTGAGGAAAGCCAGCTGCAACCAAACCGTCATCGGTTCAGTGCCTAATCCACCAACCAGCCCCATGAAAAACTGGGGTGGCTTCAAAATCCcaaagaaaggagagagggtACAGCAGGCAGATGGACAAGAGGCTGCGGAACGGAAACTGCCCTCGGAAGATATGAGCCTAGATAAGATTTCCACCAAAGGAAGGGCCAAGGCCCGGCTAAAACCGGAGGTGGAAAATGACAGCTACGCCCCTGATGCGGAGCTGAGTGACTCTGAGCCAGAGGCAAAGGAGAAGAAGTGCCGTCCGCAGCGGCTCGGCGCAGGTACGGCCATCAACCGGAGGTACGGCACAGACATCATCCGGAGGAGCATTCTGGCTTCGTGAAGGGCTGGACTGTCTGGAGTGGTGGCTGGTTTGGTTACTTGAAGCACTGCCTAAACcgtgttttttcttatttttttgtttccccagaATTATTCTGAAGAACTTTACACTTCAAAGATTCCATCACtgtgcttgtatttttttttacatgattttttttttttttctctgatttAGTAATTTCAGTGTACAACTTTGTTATTCAAATTCGAGGATCTGTTTTTGTCCCCACTTAATCCCTGGGCCTGAAACCAACAAGAAAATGATCGATTCCAAACCCAAAGACTTCCTCTGCAGAGTTGAAAACACTACCCTACTTGACATATTTTGCCTGGAGAGGTGAATGAAACCGTGAGACAGACTAGCCTCAGTGAGTGCTGGGGCCACAGAATTGACCTTAAGTTGCTTTCTTTAAGTTCAAAAAAAGCACAAGTTCTTAAAGTATTCGCACtaaagtataaaatatggtAGACTGCCATAATGCACTGTTGTTTCCACTTAATCATTGTTTTCAACTTCAGTAGAAGCCAATCTGGCATAGTTCTGTTCTGCGAAAAGTAATGGTTCTAAGTTATGCGTTTTGCTGGGCAACTTTTATCCTCCTTTTCAAACCAAGGTGAAGAATGAAAGATGTGTAtttatcttgtgttttttatttttttcttctgtagcCCCACCTCTTAATTTGAGTTTATTGAGATGTACAAGGATCTTTAGAAAGAAGGGTGTGATTGATGCAGCCACTTGTTTTTCTTGGCAGTTACTGAGCAGCGCGGCTCAGTTCAAACAGCGTTCCTTGACAGTGCTGGGGTAGCAAGGAGCTGCACTTCATGTCTGCACTAATGATAAGAGCTGGGGTGTGACTCATCAGTGCAGCCGCACTAAAACAGGGATTGCATTCAACCtttttttgataaataaatgcatatagaGTATTTGTAGGTCTTGCCAAATAATGTGTGTCTGCAATCATATAATGTAGCCCTCCCACCTGAGTGTTTAGTTAAGCAATAATGATGGGCTGTCAGCAATAAATCTCCTTGATCGAAAAATCCAGTGTCATATTTAGATTATGATTCTGTATTCCAGAGAGCTGGCGAATGTATGAAACTTAAAAGTATTGACGATGCctcttaatgttttttaaatccaaaaatAGACCCTATCCTTAAAATAGTTCTATTCTTGGTAGAGATCATTCGGAGAGCTTATCTGTGACTCTTTCATGTTAccgttacaaaataaaatcgcTTGCTTACATATCGGAACATCCTCGACTGACATTTTTGCttccttttccatttaaatttcTTGTAGAATGCTTAGCCATATTTCTCCATAGACTTTAGCTTAAAAATGTCTGCAAGATGTTTGTGACAGCACACTTTTAATAATGCCTGAGACCATTACAtcattgtgttttcagtgtgatGCAGCGGAGATTGTAGCGGGAAATCcgtttttgaatatatataatatatatatatatattttttttttttctgactgaCAACCTCGCAAGTTTTAGAATACTGTACACAGTGTTGTGGATTAACACACTTTAACTGCTATACAATGTCATAGTAGATTAGGCTAATTAAGCTTCTGTTCAAGTGGCTTTGGCATGCCTAAAAGGAATAAAGGTAAACAAAGGGATTTGTGTTGTGCATTTGATTTCCTATCACTGTGTTAAGTTGTGCagactgtatttacagtaaaacCTTGTACAGACAATTCTCACTATGTGCCTAGCTTTGTGTCCATTTGAGTTCAATAAGCAAATAGATGCATGAAGCAACACAggcaaaaatatgaaaaaaaaaaaaaagatttatacatagaaaactattttatatgACTTGGCcctttgctgtatttatttttctttttccatttaaaaatatttataaaagtaGTTGAAGACaactatattttttgtttttgactgaaCATTTAGAAGAATTGTGCCTTTTTGTCCGTTTGTGAATAAACTGCTGTACATTTTGCAATACA

Function

GO:

id name namespace
GO:0060828 regulation of canonical Wnt signaling pathway biological_process

KEGG:

id description
K11347 JADE1, PHF17; protein Jade-1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017664 True 4924 mRNA 0.48 11 17425411 17462601

Neighbor

gene id symbol gene type direction distance location
AMCG00017661 pcdh10,pcdh10a,LOC106604685,LOC104931883 coding downstream 627570 16785668 ~ 16797841 (-)
AMCG00017659 NA coding downstream 2190642 15223502 ~ 15234769 (-)
AMCG00017660 tada2b coding downstream 2211666 15213497 ~ 15213745 (-)
AMCG00017648 naa15,LOC105908469,LOC108263533,LOC108434806 coding downstream 2345105 15075823 ~ 15080306 (-)
AMCG00017647 LOC108434806,LOC107737080,LOC105908469,LOC107712022 coding downstream 2350892 15063427 ~ 15074519 (-)
AMCG00017670 NA coding upstream 52282 17514883 ~ 17531328 (-)
AMCG00017671 abhd18,LOC107595739,LOC107653339 coding upstream 95843 17558444 ~ 17575772 (-)
AMCG00017672 NA coding upstream 126280 17588881 ~ 17599693 (-)
AMCG00017669 NA coding upstream 158301 17620902 ~ 17664785 (-)
AMCG00017677 NA coding upstream 220561 17683162 ~ 17697440 (-)
G92200 NA non-coding downstream 172781 17252430 ~ 17252630 (-)
G92183 NA non-coding downstream 263766 17161245 ~ 17161645 (-)
G92179 NA non-coding downstream 427907 16997220 ~ 16997504 (-)
G92176 NA non-coding downstream 498601 16926494 ~ 16926810 (-)
G92156 NA non-coding downstream 668744 16756430 ~ 16756667 (-)
G92313 NA non-coding upstream 251302 17713903 ~ 17714182 (-)
G92375 NA non-coding upstream 391326 17853927 ~ 17855416 (-)
G92386 NA non-coding upstream 427741 17890342 ~ 17891070 (-)
G92401 NA non-coding upstream 642388 18104989 ~ 18105268 (-)
G92428 NA non-coding upstream 925204 18387805 ~ 18452812 (-)
AMCG00017663 NA other downstream 30362 17387484 ~ 17395049 (-)
G92129 NA other downstream 1394506 16030402 ~ 16030905 (-)
G92124 LOC101154678 other downstream 1557764 15866947 ~ 15867647 (-)
AMCG00017638 scoc,LOC103463814,LOC103132857 other downstream 2660579 14760068 ~ 14764832 (-)
AMCG00017631 NA other downstream 2940593 14433158 ~ 14484818 (-)
AMCG00017665 NA other upstream 6004 17468605 ~ 17487497 (-)
AMCG00017675 NA other upstream 319047 17781648 ~ 17789749 (-)
G92436 NA other upstream 1000183 18462784 ~ 18463176 (-)
G92591 nansa,LOC108416893,LOC108416857,LOC107723182 other upstream 1950386 19412987 ~ 19419356 (-)
AMCG00017725 NA other upstream 2839399 20302000 ~ 20358625 (-)

Expression


Co-expression Network