Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00017667 |
| gene name | mfsd8 |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030131.1 |
| NCBI id | CM030131.1 |
| chromosome length | 33043351 |
| location | 17578055 ~ 17585825 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| symbol | description |
|---|---|
| mfsd8 | Predicted to enable transmembrane transporter activity. Predicted to act upstream of or within transmembrane transport. Predicted to be located in lysosomal membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in neuronal ceroid lipofuscinosis 7. Orthologous to human MFSD8 (major facilitator superfamily domain containing 8). |
| description |
|---|
| PREDICTED: major facilitator superfamily domain-containing protein 8 isoform X1 |
| id | name | namespace |
|---|---|---|
| GO:0016020 | membrane | cellular_component |
| id | description |
|---|---|
| K12307 | MSFD8, CLN7; MFS transporter, ceroid-lipofuscinosis neuronal protein 7 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00017667 | True | 1246 | mRNA | 0.51 | 8 | 17578055 | 17585825 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00017666 | pgrmc2 | coding | upstream | 66764 | 17509251 ~ 17511291 (+) |
| AMCG00017662 | NA | coding | upstream | 149720 | 17395731 ~ 17428335 (+) |
| AMCG00017656 | NA | coding | upstream | 1743005 | 15828929 ~ 15835050 (+) |
| AMCG00017658 | NA | coding | upstream | 1783608 | 15609983 ~ 15794447 (+) |
| AMCG00017657 | slc7a11,LOC107740166,LOC107593222,LOC107680987 | coding | upstream | 1972945 | 15599419 ~ 15605110 (+) |
| AMCG00017673 | NA | coding | downstream | 90784 | 17676609 ~ 17692389 (+) |
| AMCG00017679 | reep1,LOC107719410,LOC107731967,LOC107703485,LOC107561684 | coding | downstream | 168700 | 17754525 ~ 17782183 (+) |
| AMCG00017681 | NA | coding | downstream | 206489 | 17792314 ~ 17797219 (+) |
| AMCG00017678 | NA | coding | downstream | 224864 | 17810689 ~ 17824102 (+) |
| AMCG00017683 | LOC107733402,LOC107667450 | coding | downstream | 248383 | 17834208 ~ 17863721 (+) |
| G92267 | NA | non-coding | upstream | 9892 | 17566643 ~ 17568163 (+) |
| G92230 | NA | non-coding | upstream | 132062 | 17445625 ~ 17445993 (+) |
| G92229 | jade1,LOC107712027 | non-coding | upstream | 137091 | 17440658 ~ 17440964 (+) |
| G92228 | NA | non-coding | upstream | 137846 | 17439660 ~ 17440209 (+) |
| G92197 | NA | non-coding | upstream | 335991 | 17241816 ~ 17242064 (+) |
| G92298 | NA | non-coding | downstream | 92843 | 17678668 ~ 17685635 (+) |
| G92316 | NA | non-coding | downstream | 138418 | 17724243 ~ 17724515 (+) |
| G92317 | NA | non-coding | downstream | 139595 | 17725420 ~ 17726983 (+) |
| G92318 | NA | non-coding | downstream | 143044 | 17728869 ~ 17729075 (+) |
| G92320 | NA | non-coding | downstream | 145055 | 17730880 ~ 17731252 (+) |
| G92130 | LOC101154678 | other | upstream | 1442739 | 16135025 ~ 16135316 (+) |
| G92123 | LOC101154678 | other | upstream | 1710421 | 15867031 ~ 15867634 (+) |
| AMCG00017650 | NA | other | upstream | 2462024 | 15109422 ~ 15116031 (+) |
| AMCG00017652 | NA | other | upstream | 2471220 | 15093191 ~ 15106835 (+) |
| AMCG00017651 | NA | other | upstream | 2487226 | 15088132 ~ 15090829 (+) |
| AMCG00017668 | NA | other | downstream | 15710 | 17601535 ~ 17620033 (+) |
| AMCG00017674 | rnf103,LOC107722440 | other | downstream | 113098 | 17698923 ~ 17723950 (+) |
| G92538 | NA | other | downstream | 1487413 | 19073238 ~ 19073662 (+) |
| AMCG00017710 | nans,LOC108241509,LOC103384124,LOC107390934,LOC107390917 | other | downstream | 1810203 | 19396028 ~ 19433103 (+) |
| AMCG00017712 | NA | other | downstream | 1858347 | 19444172 ~ 19528293 (+) |
