AMCG00017668


Basic Information

Item Value
gene id AMCG00017668
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 17601535 ~ 17620033 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017668
GGCGACCAAGGTGACTACAATGACAAAGGGGGCCCAAGCCCAGGCCCAGGTCCAGGCAGTGTGTCCTTCATCCTCCCGGCCCAGTTGTTAGAGCTCCCTCACCGAGAGGCTGTCCTCAGCATGGCCTCCACTCCGGACTGCGGCCTGCTTCTGGTGGGCCAGGACGGCCTGCTGTCCCTCTGGTCTTCAAAGCTcaagctaaaaaaaaacaaagccctTCTTGTGAGTAAAGACAAAAGCCCAAAGACTATTCTAAATGATCGAGAATTACGCCTCTATGAGCTCTCCAATTTTGAACCATACTTCCAGATCACGGGTCTTGAAAGTTTACCTCTTCAGCTGGAGTACAGaaaCTGGTCAAAGTGTCCCCCAGTTGAGGGCATCCCGAGCAGTTACCTGGATAATATCTGTGACGGGCGTCAGattaAATATGTTCATTCCATTCAGTCAGTGATATCCAGTTCGAATGATGAACACGCAGCTTTAGTAATAGGCAGTGTCAAGGGCTCCAAGACAGTGCTGCAACGGCTGAAGGATATGTCAGAGCGGGGCAGTGTGAGAAGCTCCCTCTGTGCTCAGGCTGCCTCCTCTCCGCCCCGTCGCCTCAGCTCAGATGAGTCTGTCTTCAGGGCCTACAAGGGAGTGAAAGCCTTCGATTTCTGTAAGCAGAGGAACCTGCTCGTCTCAGGGGGGCTGGACCGCACCATTCGCCTGTGGAACCCCTACATCCCAGGATGGCCGACTGGTGTAATGCAGGGACACAATGCACCGATCAGTTTCCTGTACCTTTGCAGTGAAGAGAACAGGATCTACTCTGTGTCCACTGACAACAATGTTATGGTGTGGAGTACGGAAGATCAGACCTGTTTAGCCAACATCATCTCCAGAGCCAGTCGTATCAGAGGGGAGCTGGCTGCCTGCTGCTTCTCCCTCCAGCTGGGGGCGCTGTGCATTGCCACAGACAGCCTGGCTGTGCTGCAGCTCAGACACAGAGCAGCTGAGCACAGTCACTCCTCCAGCTCCCACCGCGAGGCAGTGCTGTGCTGTCGATACAACACACACCTCCAGCTATTTGTCAGCTGCTCCCAGGGTTCACTTGTGAGAATATGGGACTTGAACACAGGAGCTATGCTGTCACAGTTTCATTGTTCTCATGGAGGCGCTGACGTAACCTGCATGGCACTTGATAACAGCGGAAAGAGGATCATCACAGGGGGCAGAGACGGCTCACTCAAACAATGGGACTGCAGCAATGgggactgtgtgtctgtcttcagGAGAGATGTGGCTGATGAAGTGAACAGCTGCATGCAGGTTGATATTCACAACAAAAGgtgtataATATCTGTTGGCTGTGACAGATGGATTAGCATTTTTCccCCCTACCGCCACCAAGACGACATTGTGTCTGTTGACCTCTGGCCCCCCAATCTCCTGGCCACCTCCAGTTGTGGGGGGGAGGTGTTGGTGTGGAACTTGGTGTCAGGCCTTCTCTTCTGTCAGCTCAGCTCTCTGCACTGCTGTCCCCTGTCCCAGCCCCCAGATGAGGATCTGAATGTTTGCAAGGTCCTTTTCATCCTTTCAAGGGCTTCCAATCACAAAACCGCAGCTACCTTAGTGGCCAGTGGACCTGGAGTCCCAGTGGTAGACCTGGCTCTCGGGGAGGGGGGGTCCTGGCTATTGTCTGCTGATCATTTGGGCTGGCTTCACATCTGGGACATCGCAGACTTCGCCCAGCATGGCCCTGAGACTAGCACACCCCCATGTACCTTTGGGCAGAGGGAACGCTGGCATGTGAAGGACAAGGAGACCTGGAGTGCGGAGCTGCCTGAGGATCTAAGGAGCCACACTGAGGGGCCCCTGACTGTGTGCCAGGGAGCCGTCCCCCCCACAGGAGACCGGGACATAGAGGAGGAGCTGCGGCAGCCTCCCTACACACGGCGAGCCCGCCGGGATCACCTGACCCACATGAGCATCCCACAGGTGTCGGGGAGGCTGATGACCTACCACACGTTGCAGTGTCACGAGCTAGACGACGTCTGCAGGGACATCCGCAAGCCAGACCCTGCGGCAGAGCTTCACGAC
>TU115097
AGAAGATAACCTTTTTTACCATTGTATTGGTATATCAGGTTACATGTTATATGAAAGTTAACATGTCTTTGTAATGCAGAGTATTTTAGCTGGaaagtacataaataatatgccagaacaaaaacacacataaaagttaatgattttgtttgaaGATGCTGTAGACAATGTTAGTTCTACAGGACTGATCTGCTAGCGTTTCATCATTGATTGAGGAAAAGGCATTCTGATCCGATTTGTTGCTGTGGAGCCAACAGGGCGACCAAGGTGACTACAATGACAAAGGGGGCCCAAGCCCAGGCCCAGGTCCAGGCAGTGTGTCCTTCATCCTCCCGGCCCAGTTGTTAGAGCTCCCTCACCGAGAGGCTGTCCTCAGCATGGCCTCCACTCCGGACTGCGGCCTGCTTCTGGTGGGCCAGGACGGCCTGCTGTCCCTCTGGTCTTCAAAGCTcaagctaaaaaaaaacaaagccctTCTTgaagaaaacaaacaaccagcCAGGACTCCCAAGTGGATAGCTGATACAACCTTAATGCCACAGTATAACAAGCTTGTTATTGGAACCTGTGATCGAGAATTACGCCTCTATGAGCTCTCCAATTTTGAACCATACTTCCAGATCACGGGTCTTGAAAGTTTACCTCTTCAGCTGGAGTACAGTTACACAGGTGAAGATGAATGCATTTTGCTCTATGGTGATGATCAGGGATgtgtcaatattattttaatctcaaaTGTGGGAGAGACACTAAGaaaCTGGTCAAAGTGTCCCCCAGTTGAGGGCATCCCGAGCAGTTACCTGGATAATATCTGTGACGGGCGTCAGGTCAGCTGTATTCGATGGAAGGTGCACAATGATTGGGTAACACagattaAATATGTTCATTCCATTCAGTCAGTGATATCCAGTTCGAATGATGAACACGCAGCT

Function

GO:

id name namespace
GO:0007049 cell cycle biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017668 True 2085 mRNA 0.55 18 17601792 17620033
TU115097 False 932 TUCP 0.44 7 17601535 17606208

Neighbor

gene id symbol gene type direction distance location
AMCG00017667 mfsd8 coding upstream 15710 17578055 ~ 17585825 (+)
AMCG00017666 pgrmc2 coding upstream 90244 17509251 ~ 17511291 (+)
AMCG00017662 NA coding upstream 173200 17395731 ~ 17428335 (+)
AMCG00017656 NA coding upstream 1766485 15828929 ~ 15835050 (+)
AMCG00017658 NA coding upstream 1807088 15609983 ~ 15794447 (+)
AMCG00017673 NA coding downstream 56576 17676609 ~ 17692389 (+)
AMCG00017679 reep1,LOC107719410,LOC107731967,LOC107703485,LOC107561684 coding downstream 134492 17754525 ~ 17782183 (+)
AMCG00017681 NA coding downstream 172281 17792314 ~ 17797219 (+)
AMCG00017678 NA coding downstream 190656 17810689 ~ 17824102 (+)
AMCG00017683 LOC107733402,LOC107667450 coding downstream 214175 17834208 ~ 17863721 (+)
G92267 NA non-coding upstream 33372 17566643 ~ 17568163 (+)
G92230 NA non-coding upstream 155542 17445625 ~ 17445993 (+)
G92229 jade1,LOC107712027 non-coding upstream 160571 17440658 ~ 17440964 (+)
G92228 NA non-coding upstream 161326 17439660 ~ 17440209 (+)
G92197 NA non-coding upstream 359471 17241816 ~ 17242064 (+)
G92298 NA non-coding downstream 58635 17678668 ~ 17685635 (+)
G92316 NA non-coding downstream 104210 17724243 ~ 17724515 (+)
G92317 NA non-coding downstream 105387 17725420 ~ 17726983 (+)
G92318 NA non-coding downstream 108836 17728869 ~ 17729075 (+)
G92320 NA non-coding downstream 110847 17730880 ~ 17731252 (+)
G92130 LOC101154678 other upstream 1466219 16135025 ~ 16135316 (+)
G92123 LOC101154678 other upstream 1733901 15867031 ~ 15867634 (+)
AMCG00017650 NA other upstream 2485504 15109422 ~ 15116031 (+)
AMCG00017652 NA other upstream 2494700 15093191 ~ 15106835 (+)
AMCG00017651 NA other upstream 2510706 15088132 ~ 15090829 (+)
AMCG00017674 rnf103,LOC107722440 other downstream 78890 17698923 ~ 17723950 (+)
G92538 NA other downstream 1453205 19073238 ~ 19073662 (+)
AMCG00017710 nans,LOC108241509,LOC103384124,LOC107390934,LOC107390917 other downstream 1775995 19396028 ~ 19433103 (+)
AMCG00017712 NA other downstream 1824139 19444172 ~ 19528293 (+)
AMCG00017730 ppp3ca,LOC107084148,LOC106922390,LOC106958666,LOC102788851 other downstream 2373052 19993085 ~ 20003129 (+)

Expression


Co-expression Network