AMCG00017669



Basic Information


Item Value
gene id AMCG00017669
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 17620902 ~ 17664785 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>AMCG00017669
GCCGGTTACCAGCTGCAGAGGAAGCCCAGTGCATTCTGCTGAGATCTCCCTTCACCGGGACAAGccttgtgctagtatatatatagtatatagatATAGGCTTACATAATATAGCTTACTGAGAGCGCTGCTTGACAGATTTGACCGATAGCTCCATCTGGAAGTCACAGGCGGTCATTCTCTTTGTTGAAGGTTAGATTGCAACGTGAGAGCAGGGCGAGCATCCTCAGCCTCTTTCAACATGTCAGTGGTCGGCATTGATGTGGGTTTCCAAAACTGCTACATCGCGGTTGCCCGGAGCGGCGGCATTGAAACCATTGCAAACGAGTACAGCGACAGATGCACACCtgcatgtgtgtctctGGCATCCAAAAACCGCACAATTGGAAATGCAGCAAAGGGCCAGATGATAACAAACTTCAAGAACACAATCCATGGCTTTAAGAAGTTCCATGGCAGGGCATTCGACGACCCTGTTGTCCAGGCAGAGAGGCCTAAGGTTCCCTACACATTGCATAAGATGCCCAATGGCAGCACTGGAGTTAAGGTGCGCTATCTGGACGAAGAGAGGGTGTTCACGATTGAGCAGGTGACCGCAATGTTGCTGACCAAACTGAAGGAGACTTCAGAGAGTGCGCTGAAGAAGCCCGTGGCAGACTGTGTCATTTCAGTTCCAAGTTTCTTCACAGACGCAGAGAGAAGGTCAGTGATCGATGCCTCTCAGATTTCTGGCTTGAACTGTCTGCGGCTTATAAACGACACTACTGCAGTTGCTCTGGCTTATGGGATATATAAGCAGGATCTGCCCACCCCTGAGGAGAAACCCCGCAATGTGGTATTTGTTGACATTGGACATTCCTCATACCAGGTCTCCATTGCTGCTTTCAACAAGGGCAAGCTGAAGGTTCTTGCCACTGCCTTTGACCCCTACCTTGGAGGCAGGAACTTTGACGAAGTCTTAGTGGATTATTTCTGTGAGGAGTTCAAGACCAAGTACAAGCTCAACGTGAAGGAGAACCCCAGGGCAATGATTCGTCTCACTCAGGAGTGCGAGAAGCTGAAGAAACTGATGAGTGCCAACTCCTCTGACCTCCCGCTGAACATCGAGGCTCATTTTGAGGAAATGTGCGCTCACTACCTAACCAGAGTGGAAGCTCCTCTGAAAGTGGCAATGGACCAAGCTAAGCTGACGCGGGAGGACGTGTATGCAGTGGAGGTGGTGGGCGGCGGGACCAGGAGCCCAGCCATCAAGGAGAGGATCTCGAAGTTCTTGGGCAAAGACATCAGCACCACACTGAACGCGGACGAGGCTGTGGCACGAGGATGTGCATTACAGTGCGCAATTCTCTCTCCAGCATTTAAAGTGCGGGAGTTTTCCATCACAGATGTCGTGCCATTCCCCATTACCCTGAGGTGGAAATCATCATCAGATGAGGGAATTGGgGAATGTGAAGTCTTCAGCAAGAACCATCCAGCCCCCTTCTCTAAAGTCATTACCTTTCACAAAAAGGAGCCCTTTGACCTGGAAGCTGTGCAGAACGTGGTTCCCCAGACCGATGGGGACAGCTCCAAAGTGAAGGTCAAAGTTCGCGTCAACATTCACGGGATCTTCAGCGTGTCCAGTGCCTCTCTGATCGAGAAGCAGAAGGGGGAGGTTGATGTTCCCATGGATATGGAGCCCACTGTTCAGAATGAGGGCCGGCAGGACGAGCAGCAGCACCCCTCTCTTCTCATTGAAGATGACACCTATTACTATGAGGAGGAGaaTAAGATGCAGGTGGACCAGGAGGATGCACAGTCCAAAGAGCAGGGGGAGGCAGCTGGCCAGGCCGGGGAGGAGGCTGGGGCTGCAGGCTCAGACAGCAAGGAGGGTACAGCTGGGGATAAACAGGACCAGAACCCCGGTGCCTCTGCATCCAAAGTGAAGGTTAAGAGCGTTGATCTGCCCATCCTGAGCAACACCATCAGACAGCTGGAGCGGGACCTGCTCAATAGCTTCATGGAGAACGAGGGAAAGATGATAATGCAGGACaagctggagaaggagagaaacGATGCCAAGAATGCAGTGGAAGAGTACGTGTATGACCTTCGAGACAAACTGTGCGGCATCTATGAAAAATTAATCAGCGAAGATGACAGCAGCAGACTGACCCTGATGCTGGAGGACACTGAGAACTGGCTGTACGAAGAGGGGGAGGATCAGCCCAAGCAGGTCTACGTGGACAAACTGGCAGAGCTGAAGAGATATGGTCAGCCCATTCAGGACCGCTACAGGGAGCATGAGGAGAGGCCAAAGGCATTTGATGATCTGGGGAAGAAAATCCAGCTCTTCATGAAGGCTGTGGAAGCATACAAGCAAAAGGATGAGAAATATGATCACCTGGACAGCGCCGAGATGGCCAAGGTGGAGCAGTGTATCAGTGAGACGATGGGCTGGATGAACAGCAGGATGAACGCACAGAACAAGATGACTGTAGCCCAGGACCCTGTAGTCAAAGTGTCAGAAATAGTGGCAAAAACCCAGGAATTTGATGACATATGCTGTGCTGTCATCAACAAGCCAAAGCCTAAAGTGGAGCTCCCAGTGGACGAAAAGGACAAGACCAACGGGGCCCATAACGGCCCCGTGAATGGACAGGGTGGGTCGGAGGGCAAGGCCGAGGCCAAGGGAGACCACGGCCAGCAGACGAAGCCGCCCACAGGGGAGATGGACGTGGACTGAAGCCCCTCCACCATCTCCTCAGGATATTCCATCGTCACCCTAGGTTTCAAGTCAGTTTTAGAACTGGTTTACAAGACATATTGGGTTGTTTTCcatgttctgtattttatcaGTTGTCTTGTGTATTAGGTTCTGACAcctttattatgattttttttttttttttttttggatacaTTATTGCAGTCAAGTGTGCTTTAAGGAGATGTGGAATCTGGTCAAACCTGGGTTATGAATTAGGGCCACACACTTTAGCATCGATACTCATGTCTGTGGCTGTTAGCCGATACTGGATTGGGCTATGGATGCCGCTAACAACCTTCTACTTTAttccaaaatgtgtttgttaatgCAAAACATACAGTTATGCTTTCATGACTGTTTTTTCAGCCTTGGATTAGCACTAGCATTGGACAAACCAATGTTATGTTGGAGAGGATAGTGTGAACTTCGTGCTAATcatggtctgtgaaaccagctgctCGAGTTTATGAAAAGGCAAAGGCATTGGATTTCCTTAAGATTCAGAAGTAAACGTGTATTGCAGATAAACTGCTGGTggtatatcattatatattttaaatatatttgatttggaACATGTCTGCtgtttagaatgtgtaaatattcTTTTAGTAATTTGAATTAGCcagttaattatatatttaaagaataaaaaaataaaaagtagatgCATATTACTGCAGTTATTATGGGAAAGCttgaaaaaactaataatgagTTTGGATGACAGAAGATCTTGTCTCATAAGATTGTGGTACATATGTTAATTCAGACCAAAACATTATAGTGAACTATATAAAGTTAATCTGCAGTTAAAACATTGCATAGGAAGTGAATCAGAACCAATAGATTTACTTTCCTTGTGTAACATTctcattcttaaaatatatatatatatataattgtgcaaAGGTATAATATGACAGACTGATCAGTTAGAAGAGTAGTGGAACAAATAGGTGTACCATGGAAGACATCCAGCAGATCAATCCTTTATAGGcctgttttcattctgtttgcctttagattataatttgtaaaataattagtgCTGTGTCACTGCTGAGGATAATCAAAAACACCTTAGAGGAGCACACTCAGTCTCTGTCGTGAAATTATAGTTTAATAGTCCATTTTAGCTGCTCCCAGAATAtgcaaatcaaagaaaatgcagaagcTTTCTTGCCTTCCATTGTCCCATTCAGAACAAATGGGAAAGACCGCAACTTTGTCATCGCCAGTTTGGCTTTAATCAAAAGTCTATTGGACTACTTTGCACTTCTGCTATATATGTAACAACTTGCTGGAGTATCGTATGAGATGCGTTAACACTGTATGTTCAAAACAACCCAAACTAATCCCATTTGAGCTCTTGCTGCAAACTCAGTGACAGTCAAGGTTTTGCTCGTTTGTCTTTAGTTTTATTGAGTATATAATCTTTGTCAGTACATTGCTGAGCCTGTACTGAAAATGCAGAAGAGTGAGAGTGATGGTTTAGACTGGTGAACACACGAGCACATAGAAGCAGGTGGGGAATTGAAGACTGGCACCAGCTTCAGGGCTGCATGTTGCTTGCAATTGAACGTGAGCATGGGACCTGACAAAGCTTACTGGTTACTCCTGCCCAACAAGGcagtcagtttgtgtgtttgggaTTGGCACACCCTTAATTCAGCGTCTTGCAGGGCAGGTATACATTATGCACTGATTGTATTTGTGAAGTGAGGAATGAGTGTTGTCAATACTGTTCTGTGCAAAGAACCAATGTACTTACAAAGTGTCCTGCTATTATTCTGTGAACCCTCtgttagtgtttgtgtttgtaacaCTGTCAGCTGTTTTCAGTCAAAGCTGGTAATGAGTTTTGTTtgattggtttaatttattgtgagaCAGTGTAAaagtctatgtgtgtgtatatatatatatatatatatatatatatatatatatatagctactATCAATACACCGCAAATACAGAGCAAGAGGCAGTTGTCTAGATTTGAGGGATAccttgtatgttttgtttttgtttttgtaatttacttttCAGATATGTTAGTGGAACATCTATAGGCCAAGTATTTgtgattacaattatttatatatatataaataatctgtAAGGTTTGACAATGCCTTTATCGTTTGTATGAAAGAGACTTAATTCTGAGTAATACAATCTTGCTGGAAGCATCAgttgtaaagatttttttattaaacatttaaaagagggTTTCCATTAACCTAAAATCCCCCTTCTCCTGATTGATCCCTTAAAATAACCTGGCTGTCCAGAAGCACAATTTCACCGGCACTCGAATTTCGGCTTCATGAACACATTCCATAAAGAATGGTAAGGTGTAGAAGATGGGACTTTTATTCTGTTCGATGTATTTTCCTTAAATATTCTCAAGTCTTATCACATTATCAAGTGACCCCCTTCCCCCTCCTGAGTGAGCGAGTTATTGGATGCCCTAAATTAGACACGCTGTACTGACGCAGAGTTGCAGTCGTCTGACGTCTCTATAACGCAGCTTCTGTCTTTTCTGCtcaaaaaaaacaccaccaatgACATCCAGTATTTTCCATTGCAGCTGTGACAATTTCGTACCAAAGtggtattaaatatgtaaaaacaataaccatactactaataataaaagtgttactttttctttcaccttatacatacacacactttattttttgaCTGGTTGGTGATGGAGCAAATCATGATACGGTCGGCTGAGGAATACTGGTGTACTGTGAATACAGCAATATGAAATAAACTCCCGCAAACACCAA

Function


GO:

id name namespace
GO:0005524 ATP binding molecular_function

KEGG:

id description
K09485 HSP110; heat shock protein 110kDa

RNA


RNA id representative length rna type GC content exon number start site end site
AMCG00017669 True 5560 mRNA 0.44 20 17620902 17664785

Neighbor


gene id symbol gene type direction distance location
AMCG00017672 NA coding downstream 21209 17588881 ~ 17599693 (-)
AMCG00017671 abhd18,LOC107595739,LOC107653339 coding downstream 45130 17558444 ~ 17575772 (-)
AMCG00017670 NA coding downstream 89574 17514883 ~ 17531328 (-)
AMCG00017664 NA coding downstream 158301 17425411 ~ 17462601 (-)
AMCG00017661 pcdh10,pcdh10a,LOC106604685,LOC104931883 coding downstream 823061 16785668 ~ 16797841 (-)
AMCG00017677 NA coding upstream 18377 17683162 ~ 17697440 (-)
AMCG00017676 NA coding upstream 56316 17721101 ~ 17734579 (-)
AMCG00017680 NA coding upstream 160273 17825058 ~ 17833817 (-)
AMCG00017684 NA coding upstream 263648 17928433 ~ 17942165 (-)
AMCG00017688 NA coding upstream 509366 18174151 ~ 18177011 (-)
G92200 NA non-coding downstream 368272 17252430 ~ 17252630 (-)
G92183 NA non-coding downstream 459257 17161245 ~ 17161645 (-)
G92179 NA non-coding downstream 623398 16997220 ~ 16997504 (-)
G92176 NA non-coding downstream 694092 16926494 ~ 16926810 (-)
G92156 NA non-coding downstream 864235 16756430 ~ 16756667 (-)
G92313 NA non-coding upstream 49118 17713903 ~ 17714182 (-)
G92375 NA non-coding upstream 189142 17853927 ~ 17855416 (-)
G92386 NA non-coding upstream 225557 17890342 ~ 17891070 (-)
G92401 NA non-coding upstream 440204 18104989 ~ 18105268 (-)
G92428 NA non-coding upstream 723020 18387805 ~ 18452812 (-)
AMCG00017665 NA other downstream 133405 17468605 ~ 17487497 (-)
AMCG00017663 NA other downstream 225853 17387484 ~ 17395049 (-)
G92129 NA other downstream 1589997 16030402 ~ 16030905 (-)
G92124 LOC101154678 other downstream 1753255 15866947 ~ 15867647 (-)
AMCG00017638 scoc,LOC103463814,LOC103132857 other downstream 2856070 14760068 ~ 14764832 (-)
AMCG00017675 NA other upstream 116863 17781648 ~ 17789749 (-)
G92436 NA other upstream 797999 18462784 ~ 18463176 (-)
G92591 nansa,LOC108416893,LOC108416857,LOC107723182 other upstream 1748202 19412987 ~ 19419356 (-)
AMCG00017725 NA other upstream 2637215 20302000 ~ 20358625 (-)
AMCG00017780 LOC101079287,LOC106577738,LOC100690429,LOC105925506,LOC108244244 other upstream 5653308 23318093 ~ 23321954 (-)

Expression



Co-expression Network


Homologous


species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_012322 hspa4l coding NC_007128.7 CM002901.2 43430365 ~ 43466317 (-)
grasscarp (Ctenopharyngodon idella) CI01000315_00177207_00200023 HSPA4L coding CI01000315 null 176469 ~ 200148 (-)