AMCG00017670


Basic Information

Item Value
gene id AMCG00017670
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 17514883 ~ 17531328 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017670
AACAAACATAAATGGGTCCCACTACCACTAGAAGACTCCAGTCAGGACGACACGGAAAGACCCAGCTCCAGAAACAGCTCGCACTCGCTCGCAGAACCCAACAGGGCGCTGCACAATAACAGAAGGAATGATTATGCAAGGAGCTGGCGGCGGGAGCGCAGGGACGACCTGGACGAAGTGTCGAGTGTGCGCAGTGAGGGAGGCAACGTCAGGGGGGGCTTCCGTGGCAGAGGCCGAAGccgaggaagagggagaggccGTGGCAGGGGAAACCTGCACATGCACTATGATTACTCCTATGGATACCGAGGGCAATATTCGGAGGACTCCGACTCATACCAGACTGAGTACAACGCCAACATGATGTATTACTACGATGATGGAACTGGAGTGCAGATGTACCCAGTGGATGAGAGCCTGCTTAAAGAGTACATCAAACGGCAAATTGAGTACTACTTCAGCCCTGAAAACCTGGAACGAGACTTCTTCCTGCGGAGGAAAATGGACGAGAATGGCTTCCTTCCCATTTCCTTGATAGCGAGCTTTCACCGAGTACAGGCACTAACCACAGATGTCAGCCTGATCTTCGAGGCACTGAAGGACAGCACCGTAGTGGAGATGACAGACCAGAAGATTCGGAGGAAAGTGGATCCTGAACGCTGGCCCATTCCTGGCCCCCCACCCCTTGATGCCCCCCGCACAGACTTCTCTCAGCTCATCAACTGCCCAGAGTTCATACCAGGCCAGGCCTTTACAGCGCAAGCCTCTGGCTCAGCCCCTAGTTCTCCTCGGGTTGGCAGTACCTTGCCGGCTAAGAAGAATGTAGAGTCCAGCAACCTGCAGTCTATGTCCAAGGGGCTTTCCACCAGCCTGCCCGACCTGGAGTCCGAGCCTTGGATAGAGGTCAAGAAACGCCACCGCCCCGCCCCTGCCAAGCCAAAGGAGAGCTCAGAGTGCCCCCCCCAGCCCGGCCCAAAGCCCGAGCCCGagcaggaggagctggactTCCTGTTTGACGAGGAGATTGAACAGCTCGCCGGCCGCAAGAACACCTTCACCGACTGGTCCGACGACGACTCGGACTACGAGATAGACGACCACGACGTCAACAAGATCCTCATCGTCACCCAGACCCCACCGCACCTGCGCAAGCACCCTGGCGGCGACCGCACCGGAAACCACGTCTCCCGCGCCAAGATCACGGCCGACCTGGCCAAGGCCATCAATGACGGCCTGTACTACTACGAGAAGGACCTGTGGACGGATGACAGCGAGATCGAGTACGCCAACATAAAGCAGGAGGTGGAGACCTTCAAGAAGCTGAACCTGATCAGTAAAGAGCAGTTTGAGAACCTGGCTCCTGAGCCTCCCATTGATCCCAACCAGGAGGTGCCCCCTGGCCCGCCCCGACCTCAAACAGAAGAGTTGGCAAACAAGCTCTTTGGTGCTGCAGAGCCTCCAGGCTCCAACCTTGCCCGATCCCTGCCAACGACTGTGCCAGATTCTCCCACGATGCACCTTGCTAGAACGCCCAAGACCCCCCGAACTCCCCGACTCCAGGACCCCAACAAAACCCCACGCTTCTACCCTGTTGTAAAGGAGGGGGGTCACATCGATGGACAGACCCCCAGGAAGAGGAAGACCAGGCACAGCTCGAACCCCCCCCTGGAGAGCCACGTGGGCTGGGTGATGGACTCCCGCGAGCACCGGCCACGCACCTCCTCTGTCAGgtctgtgtctctctcgctctgcagcagctccaatGCCTCCCCCTCAGAAGGCGCCCCGCTGGTTGGCAGCTATGGCTGCACCCCCCACTCACTGCCCAAGTTCCAGCACCCGTCCCACGAGCTGCTGCAGGAGAACGGCTTCACGCAGCAGGTCTACCACAAATACCGCAGGAGGTGCCTCAACGACCATTTCAACAGGAAGATGTACGAGGAGTTTAAACTGTACTCATTAGAAGATGCCAAGGAAAACTACAGgtaCGGATTGGAGTGTCTCTTCCGCTTCTACAGCTACGGTTTGGAGCGGAGATTCCGGCCAGATATCTTTAAGGACTTTCAGGAAGAAACTATCAGGGATTATGAAACCGGACAGCTGTATGGTTTGGAGAAGTTCTGGGCCTTCCTGAAATACTCTCAGACCAAGAACCAGCCCATCGACCCCAAACTGCAGAAGCACCTCAGCAAGTTCAAGCGACTCGAAGACTTCAGAGTGGATCCCCCGATGGGAGAGGACGTGGGCCGCAGGAGACGGCGTTCCTCTTCGACGGGTGAGGACGGGGGCCGTCGGAGACACCCTTCCAACTCCTCCAAGCCGGGCAACGCTGCTAAACCTGCTCCCGCTCACCCACCCCCAGCGCCCAGTGCCACtgccacctcctcctcctctcacaACGCACCCAAAGACAACGCCGACCGGAGGAGAGCGGAGCCGGCGGCCGCCAAAGCCAAAGACACTCAGACAGCTGGCAAA

Function

GO: NA

KEGG:

id description
K18757 LARP1; la-related protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017670 True 2478 mRNA 0.58 15 17514883 17531328

Neighbor

gene id symbol gene type direction distance location
AMCG00017664 NA coding downstream 52282 17425411 ~ 17462601 (-)
AMCG00017661 pcdh10,pcdh10a,LOC106604685,LOC104931883 coding downstream 717042 16785668 ~ 16797841 (-)
AMCG00017659 NA coding downstream 2280114 15223502 ~ 15234769 (-)
AMCG00017660 tada2b coding downstream 2301138 15213497 ~ 15213745 (-)
AMCG00017648 naa15,LOC105908469,LOC108263533,LOC108434806 coding downstream 2434577 15075823 ~ 15080306 (-)
AMCG00017671 abhd18,LOC107595739,LOC107653339 coding upstream 27116 17558444 ~ 17575772 (-)
AMCG00017672 NA coding upstream 57553 17588881 ~ 17599693 (-)
AMCG00017669 NA coding upstream 89574 17620902 ~ 17664785 (-)
AMCG00017677 NA coding upstream 151834 17683162 ~ 17697440 (-)
AMCG00017676 NA coding upstream 189773 17721101 ~ 17734579 (-)
G92200 NA non-coding downstream 262253 17252430 ~ 17252630 (-)
G92183 NA non-coding downstream 353238 17161245 ~ 17161645 (-)
G92179 NA non-coding downstream 517379 16997220 ~ 16997504 (-)
G92176 NA non-coding downstream 588073 16926494 ~ 16926810 (-)
G92156 NA non-coding downstream 758216 16756430 ~ 16756667 (-)
G92313 NA non-coding upstream 182575 17713903 ~ 17714182 (-)
G92375 NA non-coding upstream 322599 17853927 ~ 17855416 (-)
G92386 NA non-coding upstream 359014 17890342 ~ 17891070 (-)
G92401 NA non-coding upstream 573661 18104989 ~ 18105268 (-)
G92428 NA non-coding upstream 856477 18387805 ~ 18452812 (-)
AMCG00017665 NA other downstream 27386 17468605 ~ 17487497 (-)
AMCG00017663 NA other downstream 119834 17387484 ~ 17395049 (-)
G92129 NA other downstream 1483978 16030402 ~ 16030905 (-)
G92124 LOC101154678 other downstream 1647236 15866947 ~ 15867647 (-)
AMCG00017638 scoc,LOC103463814,LOC103132857 other downstream 2750051 14760068 ~ 14764832 (-)
AMCG00017675 NA other upstream 250320 17781648 ~ 17789749 (-)
G92436 NA other upstream 931456 18462784 ~ 18463176 (-)
G92591 nansa,LOC108416893,LOC108416857,LOC107723182 other upstream 1881659 19412987 ~ 19419356 (-)
AMCG00017725 NA other upstream 2770672 20302000 ~ 20358625 (-)
AMCG00017780 LOC101079287,LOC106577738,LOC100690429,LOC105925506,LOC108244244 other upstream 5786765 23318093 ~ 23321954 (-)

Expression


Co-expression Network