AMCG00017671 (abhd18,LOC107595739,LOC107653339)


Basic Information

Item Value
gene id AMCG00017671
gene name abhd18,LOC107595739,LOC107653339
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 17558444 ~ 17575772 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017671
CCGGGGTCACACGAAATCGATTAACATGTCTGAGTTCGCTCGCTGAAATCATGCACCTTGAATGCGATAAGATTAGATTCATTTATGTGTATTAATACTGTTTTCTAAGATGCAAAGGTCCGTGTTAGCATGGAGAAGAGTCTGTCCGTTTAGGGAAACCATCAGGTTAAAGGATATTAACGCAGTTTGACAGAAGCCCACGGTCTGCAACTCCTCTATTCACCGAATGCCTTGTATTTGCTAATGGGTGTGAGCCGGCTGGATGTTCTCTACAGAAGGCTTCTCCTAACCAAGCTGTTCATACAAGGTTGGGGAAAGCCGGATGATTTAAGAAGaatattcGAATTCCGGAAAATCATTGGGAATAGAGAGAAGTGTAAGAATTTGGTTCCAAAAGATTATCCAGTCTTCATAGACAAGGTAGAGGAAGAAAAGGAATGTAAAATCCTTAATGGACATTTCATATCCCCTCTGGAGCACTTTGTTCCAGGCATCTTACCAGCAGAGTCTGTGAAAGCCAGGTTCCAGTTAATATTGCCCAAAGAGTGGAAGAACAAACACAAGCCAGTATGCATTCACCTTGCGGGCACAGGAGACCATTTCTTTTGGAGAAGACGCACACTCATGGCCCGACCGATGAtaaaggagacctgcatgTCATtaccttaatttaaaatacatggatACAGAAAACCAAAAGACCAACTGTGAGTAATCCATTCCATTCCCCCTGGCTAAAATGATTCTGTTTCCATCCATGTATTTCCATAGCGGCAATTGACCACTCCAATATATAAATAGACCCACATAGTGCAATGGTTGTCATGGTGctcacagctgttttatttaatgcgGAACATGTTTGTTCCATGCTAGTTTTTTTCTTGAGATTTCCCCGAGTTTAATAATTTTGCATGCTGGATTGTGTTTTGAGCAATGTCAGCACTGTCACAGTACTGCAATAAACATCACTTCTGCTCTGAATGGTCTGTACAGGAGGCAGGCtggtatgaaaatgtaattgagacAGGAATATTTGCATTTGTCTGGTGTCTGGTGTCTGGAGTCTGGTGTCTCAGTAGTAAAGTTGTTCAAAGTATAGgcagaagcaaaacaaaaatatgaaaacaaacctgAAGACTTTGAATTTAATAATGTACTCTTTAGGGGGCTTAAGACATGTTATACCTTTTAATAATACTATTAGAAGAGAGTCATGAAGCAGTCAACATGAgagccagctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtacaGTGGAGGTCAATGGGAAGTCAGGGCAGTACTGAGGTAGTCCTTGTCTTTGTGGCCAGGCGCTCCAGTCTGAAGAATGTGTCCGACCTGTTTGTGATGGGGGGGGCTCTGGTGCTGGAGTCTGCTGCTCTGCTGCAATGGCTCGAGAGGGAGGGCTACTGGCCTCTGGGAATGACCGGCATCTCCATGGGCGGACATATGGCATCTTTAGCCGTAACAAACTGGCCGAAGCCAATCCCACTGGTTCCATGTCTGTCCTGGTCCACGGCTTCAACTGTTTTTACAACGACAGATTCCTTTAAGATGGGCCAGGACTTTGTCAAGAATGCCCCCATCAGCCTGGACAATCTCCAGCACCTTGACATCTCCAAGGACATCCTGGACTTCCAGGGGACTGACACCGAACGACTTCTGGGGACCGAGCGGTTCCACTCACTGGAGGCACACAACACAGATATCAGGGCCTCGGGACGGAGGCTCGGGATGGATGGGGGGCAGAGAGTGGGCTTCCTGGACCAGACCCTGTCAGCCGTGAGCAGCAGCAGTCCACACATGGACATGCTCAGCGCCAAGACCATCACCAAGGAGGACCGGAGGCGGCAGTCCCTGCAGCACGAGTCCCTCTGTTTTATGAAGGGCGTTATGGATGAATGCACACATATTGCCAACTTTTCTGTCCCCGTGGACCCCAGCCTGATCATCGTGGTCCAGGCCAAGGAGGACGCCTACATACCCAGGGCGGGGGTGCGCAGCCTACAGGAGATCTGGCCCGGCTGTGAGGTGCGCTACCTGAACGGGGGCCACATCAGTGCCTACCTCTTCAAACAAGGACTGTTCAGGCAAGCAATTTATGATGCCTTCGACCGTTTCCTTAAGAAGTATTCGGTCTCTAGTTGAGAAGTTTTGAGCAGCTCTCACCACAAGCGCACTTAAACCACGGAAGGTTTTCTTGAAGGAAATGAACCGAGAACTGAAATGATCTGCAAGGCTCTTTGTACCATGTAACCGTCTGCTTTGAAATTGAAACATTGCCCATGACATCATCTGAAGATGTGGTGCTACAGACAATGTAGTTGGTTGTTGGTAGTGAAAACACACTATTTTGAAATCTAAACGGTAAAAGGGATATGAGGCCCCATTTGAAAGGTGTCTCAGAAGAAATACCTCTTTAACAAGTATAGCTTAcatcattttattatacattatatttctaaatgcaGCAGATTCTCATAAAGATTATTCACCTTCTCAGTTGTTATTCATGCTATTTccccccagaaaaaaaaagcctaatGACCTTGTTGTAAGTACACTTAAAAAGGtacaatgaaatgaaaggcaTTTTTTAAGTTACTTCAGTAATTTATTGGAAAGAATGAATTGTGTTGAAAAATAGTTTATAAATCAAGTGTTCTTTGCCTGTTTGAACAACTAGGATAAGCTTTTTAAGTCTTTAATATTATATGCCACTAAAAGATGGccatcatgtattttttaaacaaaacttttCATTGTCAGCATTTGAAATCTGTTAGGTGAAACTCCTGAATGTTGCACTGATAGCCCTGGAAgataatatgcatgttttcctttctctttgAATATACACCTCATTGAACCAGCTACTGTAATGTAAAGGACTTTTTAAAAACTAGTTATATGTTTTCAGGAAAGGTGACTTGCTGAGGAATGcaatacataaacattaattatgtttaccacaaatataatttacttcAGCCTGGACAGGTTTAATATCATGTAGTATGTTGCAATGTATGTAACTTAACAGTACTCTGAACCTGTTTATGTTAAAGAAGCACATTATCTCTGATCTGGTTTAACTAGACTTGTTTCTGTGCTTGTGACCAACACTGCTCAGCAGTAGagtttctgtgtgtatataacCAGGGTATACGAGGGTCTGCGGGCAGTTTTTTACATGTATTGGTTGGTAATGATAATCAAGGATGCCTGTGATAAAGCAGGTTGTACTTTCTATTATGAAGTACTTTTGAGTTCCTGCCTGCCTTTGTAGTTGCTTGcaatatacattcatatttgctcTGAGTATTTAATTCtcacttgattttttttctactttaaatGGCTTTGTCTTTTAACCCGTATGTTATAAATTACACAGAAAGGTAACTCATTTGTTACtgattttatacatgtatataaagaAATGATTATAAATACTTAGATCACCGGCTTTAGAAAGAGCAATGATCTGTATTCAGTAAATGTACAATTTCATTCCGGGTGATGTTGAATTTCCAGGTCAATTTACTGAACTATAACAGtactttttaaacacaaatcatacaattgttctttttttgtattagttgttcaattgctttattaatgtaatacCAGTGTGGGGAGGCACCTGCCATTGaatgtaattcattattaatgttgtGCCTTAGTTTTGTGCACTAAAacatgaattacatttatttattttaattgtacatatCTTTAAGTTTACAATAAACCATTAAatgatttgtttctttgatttagTTAATGTTAAGTTAATGGGTTCATTGTTAAGAATAGTTCATTCAAATTATAGGGAAATGTAGGcattgaaatgtgattttagaACTTTATTCATTTTAGGGACAGAATTACAGGGAGATACACATAgacttttgcatttaaatatataggtaAAATGTTAAACTTGGTGGTCTGTCTTGAAATACACACACCTAATGCAGTAAGCTGGTATACAAAAACAGTAAAGATGTACAAAGGGTATTTAAATAAGATGCACTGGTACAGCAAGCATGCTGAagaacaaaaatgaagaaatctGTTTGGCAAGTGAATCCAGTTTGATCAGCTTTTTAAATCTtgtaaaaacacagacaattcTAACAAGATATAATCTGGTTAAACTACACTTGAAATAGTAGCTAGACTTCtggaaaatacattcaaaacatgTTAGTTATGATGAAAGTTTTGCAgatcagaaaaatataattttcaattgCCATTAAAGTACCTGCTAGATTACTTTTATgtaattttcttaaatgtaggcatgtagtttgattttaaaaggcagcattaaaacaaatctggagACTACTGTAACTCTAAAGCATTGAAATCTGAgatattttctatttatgttGCAGATATTGTATTGAACCCATAAATGCAGTACtaaataaaagtgtaaaacgtaatgttttattgttcccTGTTTGAGTTCTCCCATTTTTATGTAGTACtcaaaaaacatgcatttgttagtggtatatcattttaaatacaaataacaaggAGTCACTAATGGACATAGTAGGAAAACAGCAG

Function

symbol description
abhd18 Orthologous to human ABHD18 (abhydrolase domain containing 18).

NR:

description
PREDICTED: protein ABHD18-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017671 True 4622 mRNA 0.39 11 17558444 17575772

Neighbor

gene id symbol gene type direction distance location
AMCG00017670 NA coding downstream 27116 17514883 ~ 17531328 (-)
AMCG00017664 NA coding downstream 95843 17425411 ~ 17462601 (-)
AMCG00017661 pcdh10,pcdh10a,LOC106604685,LOC104931883 coding downstream 760603 16785668 ~ 16797841 (-)
AMCG00017659 NA coding downstream 2323675 15223502 ~ 15234769 (-)
AMCG00017660 tada2b coding downstream 2344699 15213497 ~ 15213745 (-)
AMCG00017672 NA coding upstream 13109 17588881 ~ 17599693 (-)
AMCG00017669 NA coding upstream 45130 17620902 ~ 17664785 (-)
AMCG00017677 NA coding upstream 107390 17683162 ~ 17697440 (-)
AMCG00017676 NA coding upstream 145329 17721101 ~ 17734579 (-)
AMCG00017680 NA coding upstream 249286 17825058 ~ 17833817 (-)
G92200 NA non-coding downstream 305814 17252430 ~ 17252630 (-)
G92183 NA non-coding downstream 396799 17161245 ~ 17161645 (-)
G92179 NA non-coding downstream 560940 16997220 ~ 16997504 (-)
G92176 NA non-coding downstream 631634 16926494 ~ 16926810 (-)
G92156 NA non-coding downstream 801777 16756430 ~ 16756667 (-)
G92313 NA non-coding upstream 138131 17713903 ~ 17714182 (-)
G92375 NA non-coding upstream 278155 17853927 ~ 17855416 (-)
G92386 NA non-coding upstream 314570 17890342 ~ 17891070 (-)
G92401 NA non-coding upstream 529217 18104989 ~ 18105268 (-)
G92428 NA non-coding upstream 812033 18387805 ~ 18452812 (-)
AMCG00017665 NA other downstream 70947 17468605 ~ 17487497 (-)
AMCG00017663 NA other downstream 163395 17387484 ~ 17395049 (-)
G92129 NA other downstream 1527539 16030402 ~ 16030905 (-)
G92124 LOC101154678 other downstream 1690797 15866947 ~ 15867647 (-)
AMCG00017638 scoc,LOC103463814,LOC103132857 other downstream 2793612 14760068 ~ 14764832 (-)
AMCG00017675 NA other upstream 205876 17781648 ~ 17789749 (-)
G92436 NA other upstream 887012 18462784 ~ 18463176 (-)
G92591 nansa,LOC108416893,LOC108416857,LOC107723182 other upstream 1837215 19412987 ~ 19419356 (-)
AMCG00017725 NA other upstream 2726228 20302000 ~ 20358625 (-)
AMCG00017780 LOC101079287,LOC106577738,LOC100690429,LOC105925506,LOC108244244 other upstream 5742321 23318093 ~ 23321954 (-)

Expression


Co-expression Network